Microarray Probes on PGSC0003DMT400067780
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_42097_PI426222305 |
JHI_St_60k_v1 |
CGAGTGTGTTTAAATTCAGCTTCAACTTCAAGAAAGCTCGAAATCTTGTAGCATGAGAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400067780
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Source Transcript PGSC0003DMT400067780 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G52740.1 |
+3 |
1e-14 |
69 |
28/59 (47%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19546446-19546868 REVERSE LENGTH=140 |
Transcript Sequence (726 bp)
>PGSC0003DMT400067780 726 pgsc_dm_v3.4
TTGAATATCAATATCAAGATTCCATCAAGAACATTAGATCTTTGTCAATTATGGATGATG
AAGATAAAACATACAATTTTTTCAACTCCACGACGATGAAAGTAAATCAAGAATACTTTC
ATAAACAAGGTGAATGTCAACATCAAGATTCTATCAAGAACTTTGAATCATTGTCTATGG
TGGATGATGGAGATAAAACAAACGATTTTTTCGTTGAATCGAAGAAGTTGGGGTTATTAG
GGAGTGAGAAATTGAAGAGGCATTGGAGAGAAGTTGAAGGTAGGGTTTTTGTGCCAGATA
GATGGGAACATGAAGGTTCTTTGAGGGAATGGATGGATTGTTCTTCTTTTGATAAAATAC
TAGCTCCGGAGGGACTAAAATCAGCTCGTGAAGCCTTGATGTCTCAAGGAAAACGAGTGT
GTTCAAGTTCAGGTTCAACTTCAAGAATGTTCGAGGTCAGAAGTAGATAGTCATGAGAGA
AAAAGAGAAGAAAGATGTCGGAAGGAAAACGAGTGTGTTTAAATTCAGCTTCAACTTCAA
GAAAGCTCGAAATCTTGTAGCATGAGAATATTGATATTCATCAGTTAGTAAGATCATAAA
TTAGGATATTTCAAGAATAAAATCCTTATCAAGGAGCTTTTAGATCTTAGTTTGAAACTT
TCTTCTGTTTGGTGAAGTTAATTGTTAAAATTTTGGCAAATTTGTATCAATCATGCCTTA
TTTTGC
