Microarray Probes on PGSC0003DMT400064470
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_43291_PI426222305 |
JHI_St_60k_v1 |
GAACTAGATCGATGAAGGATGATTAATTGAACACCTTCTGCTAGAAAAGAAGTTAGTGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400064470
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400064470 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G15534.1 |
+1 |
1e-32 |
114 |
50/67 (75%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52855.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:5258876-5259082 FORWARD LENGTH=68 |
Transcript Sequence (605 bp)
>PGSC0003DMT400064470 605 pgsc_dm_v3.4
TTTCTCTCTTCCATATAGTATATTTTTGTATGCAAAACTCCATTGATGGTTTGTTTTTGC
TTTCTGGTGGATCAAAAGAGGATGGTGCGGCGGAGTAAGCCGGTGGCTGGCTCGTGTTCG
CGGTGTGGACACGGTGCTAAAGTGGCTGAGATGTATACATCAACTAGGTTTTGTTATATT
CCATTTTATACCAAGTCTTGGAAGGCAATTGTTTGTAGTTTTTGTGGTGTCATTCTCAAA
TACTACACATAAACTCATAACAATAGATGAAGGGTGATTAGTTATATTCCCTTTTTCTCA
AGGCCGCGAAGGTGAACTAGATCGATGAAGGATGATTAATTGAACACCTTCTGCTAGAAA
AGAAGTTAGTGTATATCATGTATATAGGTAAATTATTAGTCATTGGTAGAGTTTGTGAGT
TATATATATCCAATAGGATAGCTAAGTTGAATATAACGTGAAGTCATATCAATTTATCAT
GATTTGCATGCTAATATTTAGAAATGTATTTTTCCTCTTTTTTGTTTGTACCTTTGAAAT
CATGACGATCCGCTATGATTTTTTGAGTAATATGATAAGATATGAGCTATAGCGTAAAGT
CAAAC
