Microarray Probes on PGSC0003DMT400062463
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_48482_PI426222305 |
JHI_St_60k_v1 |
GAGCTTCTTGATGAAGCAAGAGAAAAAACACAATCCGGAGAGAGAATGTCTAGAGAACAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400062463
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400062463 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G56290.1 |
+2 |
5e-71 |
219 |
106/141 (75%) |
unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20878743-20879541 REVERSE LENGTH=173 |
Transcript Sequence (805 bp)
>PGSC0003DMT400062463 805 pgsc_dm_v3.4
CAGCTTCAAGGTAGTAATTAATTAAGTCTCAAATTCATACAATATAATGGGGCTGAGGGC
TATTCCCTTTTCACCTTCTCAAAATTACTATTTGAGTGGTTCAGAATATTTCCCCAAATG
CAGTATTCTTCGTAGCAGCAGAATTTGCTCATCAAAACTAGTAGCAATTTCAGCAAAGGC
TAAAAAAGAGGATACACAAGAAGAAGAACCAAAAAATAAGAGGAAACAATCTTTGTTTTC
AAGTGTAACTGAAGCTCTTGATTTTTCCCAAGTTAGATCTTCAAAGGACGCTGAGCTTCT
TGATGAAGCAAGAGAAAAAACACAATCCGGAGAGAGAATGTCTAGAGAACAGTATGGAGC
TCTGAGAAGGAAGATTGGTGGGACATACAAAGATTTCTTCAAGTCCTACGTTGAGGTGGA
TGGACAATATGTGGAGGAGGGATGGGTAGACAAAACGTGCAAGGTTTGCAAGAAAGATAC
GAGTGGAGAAGCAAGGCAAGTTGACAAATTGGGAAGATATGCGCACGTAGCTTGCCTAGA
AAAATCCCACTCTGGAAATTTCTTCACCAAGCTCTTCTCAAGATGAATTTTGTAGTATAT
ATCTTAAGGGCTAATTAGTAGTACGTACTATTTCCTCCTCTTATATATGAACTCATAAGA
ATATAACAGCCTTGGCCATTTTGTGTTTCTCTTTTTTTCTTGACTCAATCATGAATGTTA
TCAATTGGTCTTAGCCTCTTGAATAGAGTTATTCAAAAGTATATCAGTGTATTCAGAGGC
GGAGCTATGATTTTTTAACTTTATG
