Microarray Probes on PGSC0003DMT400061578
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_40402_PI426222305 |
JHI_St_60k_v1 |
CCCATTACAAGGACTATAAATAGATATACGGGTCCCACCATTTTGATATTTTCCCAATTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400061578
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400061578 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G52710.1 |
+3 |
2e-14 |
72 |
51/150 (34%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19534638-19535507 FORWARD LENGTH=289 |
Transcript Sequence (963 bp)
>PGSC0003DMT400061578 963 pgsc_dm_v3.4
ATATCATGTGAGAAAACATGACCCATATGCCCTTTGATCTTCTTCTCTTTTTAACATATT
CCAATTTTCTTCTTCTTCTTCTTCTTCTCTCATTATATTCATCAAACTCAAATTGAAAAT
TGAAATAAACTATGTCTCTACAATCTCATCTAGATGAGAATCAGGTTTGTGCAGCTATTG
ATCATCAAATCCTAGTTCAAGATAATGAACATGTCATAAAAAGTCCAGAGACCTTGCTAG
ATCTACCTCCGGAGTCTTTTTGGATCCCAAAAGACTCGGAACAAGATTGGTTCGATGAAA
ATGCAACCATACAACGTAAGACATCGATGAAACTAGGTTTTTTTGGAAAGTCAAATGATC
ATCATTCGAAATCATTCTCTCATTGCGCTTTCACCTCGACGTTGAATCATCATCATCATC
AAAATCCAAAATCTTCATCTCTATTTGCTCTTCCAAAGTCTCATAAAACTAGCTCGACCG
ACGTAAGTCTCCGGCAAGGCAAGCAACCGAGAAGTTTATTCCGAAGCCGGTCTGAACCGG
GTAGAAAGGGTTCAACAAATGTGAGTGAACCGGGTTCACCTAAAGTTTCTTGTACTGGAA
GAGTTAGGTCAAAGAAAGACAGAGGTGTAAGAACCGGGTTTTGGAAAAAGTTAAGAACTA
TTTTTAAGATCCGGCCCAGAGCAAAAAGTGTGGCTAATGTAAATGTTGAACCGGCCGGTT
CGGTTGGTGTGAACCGGTTGGAGACTAGTGACCGGTCAAAGTCATAGAGCGGCAACTTGT
TGGGCTTTACACGTAAGCTTAATGGGCCCACTTTTGTTTGTCTCGTTAGGCCGTGATTTG
AGGCCTATAAGGCCCAATAGGCCCATTACAAGGACTATAAATAGATATACGGGTCCCACC
ATTTTGATATTTTCCCAATTCTTTAAATTTTGTAAAATATATATAATATATATTCAATTT
TCA
