Microarray Probes on PGSC0003DMT400059656
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_50812_PI426222305 |
JHI_St_60k_v1 |
CTCAAGTAGTGCTGATAGAAGGAAGAAAGCTTATTTAGTAGAAGGTGGTGAAGTTGAGAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400059656
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400059656 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G39840.1 |
+2 |
4e-108 |
336 |
189/310 (61%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). | chr4:18485268-18486623 FORWARD LENGTH=451 |
Transcript Sequence (1838 bp)
>PGSC0003DMT400059656 1838 pgsc_dm_v3.4
GTAGTACAGGGATACTGTGCTTGTCTGTTTGCTCCATGTGACATATCTCACAGCCTCTAC
TTTGGCATTAAAGTCTCCTTACCTTGCTTCAACTTCCCCTTTTCACACACACTAAAAAGT
CCTACATTTCTATCACTCTTTTTAATGCTTCCCTTCTCCACTTATCATCTTGTCTAAAAT
TCAGATCCAATCTTGGAGAATCCTCATTAGATCTTCTTCAGAACAAGAGTGAGTGAGTGA
GTCAGTACATATGGCTCCACTTCTACATTCCTGCAGCTTTACTAAGGTACTTTTAGTACT
ATGTCTTGTTTTTGTGTTATTCACTCTTTCATTCATTCCTGCACATAGTGAACTCCAACC
TCACAATAATAATGTTAGAAGCAGAAGAATGTTGGAGCTAGACAATGATTCAAAGCCAAT
TAAGAAGAAAATCACCACAAATCCAACTTCACTTTCTACTTCCAAGAACCAAACCAAACT
CATCAAATCAACCAATAGCTCTTCTAAGAATCAAACCAAGCAAATCAAGACTTCTTCTTC
TTCTTCTTCTAGTTTTGGTTCTACCAAGAACCAAACCAAGCTTTCAAAATCAAAACTTTC
CTTTTCTGAATCACAAACCAAGCCTAGTTCTACCATTACCAAATCAGAGAAACTTACTTT
CAAATCCCAGCTTCAGAAGCTCAATCTCACACCCTCCAAGTCCTCAAATTCAACCAAAAT
CACTTCTTCCACCATCAAGAAGCCTTCAGATCTACCCAAAATCAGCTCAAGTTCTTCTCC
CAAGAACAAAACAATCAAATCAACTAAATCCCAATTGGAAAAAGGCATCAATCAGTCCAA
ATCAAAAACCCCAATTAGTAAAATCCAGCCAACAGACAAAACAGCCAAAACCATTAAAAC
CCAATTGAAAAAAGACACCAGTGAGTCCAAATCCAAAACCCCAATTACTAAAACCCAAAC
CCCTGCAGTCAAGAAACCAGAGACAACCCAGAAAAAATCACAGTACAGCTGGCTAGAAAA
TGAAGATGATGACATGATTTCTGAATTCAGAGACTTGCCCTCCAAATTCCATGAAACCTT
TTTGCCAGATTTGGAGAAAATTTCCAAAACCTCACAAGTTTACCTCAACAAAGCAAACAA
AGAAATCACCAAAAACTTCAAACCCTATGTTGGAAACAAATATGCACCAACAATTGCCTC
TCTAATCTCATTTGCATTCATTTTAATCCCTCTCATTCTAGTCTCTCTCATTTTCAACAA
AATCAAAGCCTATTTCTCTCTCCAAAAACTCCTAATCTTCATCCAAGTTTACCTCTCCAT
TTACTTCTCCATCCTCTGCCTCTCCTCTTTAGTCACTGGCTTAGAACCATTGAAATTCTT
CTATGCTACAGCACAATCCACCTACATTTGCTTACAGCTATTGCAAACTCTTGCTTATGT
GTTGTACCTTTTGATGCTCCTCATGTATCTCATCTTAGTGTTTTCCACTGAAACTGGGCC
AACAACAAAACTCATAGGCCTGGCTCAAACAATTGTGGGCTTTGCTGTTGGGCTTCATTA
TTACATGACAGTGTTTCATAGAGCTGTGCTCCATCAACCACCTAAAACTAGCTGGAGAGT
TCATGCAATTTATGCCACATTTTTTCTTGTGATTTGCATCTCAAGTAGTGCTGATAGAAG
GAAGAAAGCTTATTTAGTAGAAGGTGGTGAAGTTGAGAAAAAGAGCTAAAAAATTTGTTT
ATCTTTTTTTTTCTTACTTAATTAATGGTCTATAGTTTCTTACCCCCCCATATGGCAAAA
AAAAAAAGGGGGGGGAGAAAAGAAGATTTTCATTGTCC
