Microarray Probes on PGSC0003DMT400059467
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_45962_PI426222305 |
JHI_St_60k_v1 |
GTAAAGGGGTTGATTTTATTGCTTCTTCTGTTACATGGAAATCACTTCTTTCCTTCTTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400059467
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400059467 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G07150.1 |
+2 |
2e-27 |
107 |
85/229 (37%) |
unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2263806-2264576 REVERSE LENGTH=199 |
Transcript Sequence (923 bp)
>PGSC0003DMT400059467 923 pgsc_dm_v3.4
GTCCGTTAGAAGTTGTAAGAAGAAACACAAGAAGAAGTCACTCACTACGTTATTAAACGT
CGAGTCCTACCCAGAAAAAAATGGTAGAAAGATGAAAGGGAATAGTAATAAGCAGATAGA
AATCAAGCTATTGTGTCCTTTGGTATCAAAGATGGTAGTACCAATCATGGTTTGGGAAGA
AGAAAGACTTGATCTTGGTTCCATTGCACGCATTTTTGGGCTTGACCCATTAACATTGAA
GATAAATGGTCACTTTATAAGTAAAGGGGTTGATTTTATTGCTTCTTCTGTTACATGGAA
ATCACTTCTTTCCTTCTTCTCTTCTCGTGGCTTCTCCACTCACCCACTCATTCTTCAAGG
AAATCTCTCTAAACTTGGGTCCAAAAGATCACATAGTCCAACAGTAGTTGAAAATGGGTT
GCTCTGCAAGAAGTATCTCAATGATGAGAGAGAGAAATGTCACGAGGAAACCAACTCCCT
TAGTAACAAGAAATTCAAGGGAAGCTCTAGAGGTAATGACAGATTATACAACTTTGCTAG
TGCAGGAATGGCATTGAACCTAAAAAGGAAGCTTTGTTTGGAAGGTTCGGGTCTGTTGAA
GAGATCAAGAACAGCAGATGAATATGATTCAGGTTTGAGAGAGGAACAAGTGGATTTCCC
CAAAGCTGATAGACCACTTTTATGCAGTCTAGCTAGTGAAAAGCTGAAAAGGTTTAGAGA
TGATGAGATGGTTGTATCCACCCCGTTCAAGAGGATACGATAACTTGGCCAAACACAAAC
TGTGTTAGTTAGGTAGATGTATATTGAAGTTATCGTAGCATTGTACTCACCTGTAAATAC
TTGCCAATCGGTTAAAGTTGTTGCTGACACAAAAGTTTCAAATTGCAAGAGCATTTTTTG
AGTTTTGTCAAAGTAGATTATGG
