Microarray Probes on PGSC0003DMT400058520
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_36129_PI426222305 |
JHI_St_60k_v1 |
ATAGGTGGAAACAAATGACTGGTGGCTGGATCTAGTTACATGTATGTTTTAGTTTGGTTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400058520
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400058520 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G12550.1 |
+1 |
4e-101 |
325 |
175/320 (55%) |
D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:4274649-4275831 FORWARD LENGTH=323 |
Transcript Sequence (3375 bp)
>PGSC0003DMT400058520 3375 pgsc_dm_v3.4
GTTTTATCCATTTGAGTTAGTTTTATTAACATATCATTATTGTTGACTCTGAAAATTTGA
GCAGTAATTCAATACGCACTCCAAGAAAATTAGAACATGGCTTCTTCCAATCAGTATCAA
TCGCCGGAAACCACCAATCTCCGGCTACTTCTCGTCCATCGCTATCCGAGTTATGGAAAT
CCGTTCTTATCCAAACTACAAACCCGGTACCGGGTTTTCGATCCGCTTGACGAATCCGAC
CCATCACTTCTACCCCTTTCCGGCTCGGTTCGGGTCATGCTCTGTTTTGGTCTTACTCCG
GTCACGTCGGAGACCCTGGATAAGTACCCTAATTTGGAGTGCATCGTGGGTACTGGCGCC
GGATATGACCATTTTGACCTCGCCGAGTGTCGCCGCCGTGGCATCCGCGTCACTGGCGCC
GGAGATTCGTTCTCCGAGGATGCCGCGGACTTCGCCGTCGGCCTATTGATTGACGTCCTC
CGTCGTGTATCTGCTGCTGACCGTTTTGTTCGTGCTGGCTCTTGGCCTGTTAAAGGAATA
TTCCCCCTCGGTTCTAAGGTTGGTGGAAAGCGAGTGGGCATTGTAGGTTTAGGGAGCATT
GGTTCGAGGATTGGTAAAAGACTTGAGGCGTTTGGCTGCAGCATTGCATACACCTCAAAG
AGGATGAAGCCCAATGTTTCGTTTCGTTTCCATTCTAATATTCATGATCTTGCAATCAAC
AGTGATGTTCTAATTCTTTGTTGTGCTTTAACAAAAGAAACACACCACCTAGTTGGCAAA
GAAGTGCTGACTGCCCTTGGGAAGGAAGGTATTGTCATAAATGTTGGACGAGGGGCACTC
ATTGATGAGGAGGAATTGGTTCAGTTTCTGAAGAGAGGTGAGATTGGTGGTGCTGGTCTT
GATGTTTATGAAAATGAACCTCATGTACCAAAAGAATTGTTTGGGTTGGATAATGTGGTG
CTGTCTCCACATGCTGCTGTTATAACTCCAGAGTCTTTTAAAGCCCTTGAAGAGCTATTC
ACTTACAACTTGGAAGCTTTCTTTTCAAATAAACCCTTGCGGGCACAAATTTAATGTGAA
TGATGAAATTTTCTGTTCAACATGTAAGCATACATTCTTTTACTGCTGTGATCAACTTCA
TTAAGTTTCTGCACCAAGTTGAGGGTCACTTTACTCTCCAACGAAACATGCTGAACATGA
AAAGATATGATGTGTGTGTATTTGAACAAATGATAGTTATTTCGCTAAAATAATTGTGTT
TTTATTGATGAAAGAATCCACAGGGTGTTGTGTTGCTCATATACAAAGGGGTGATATTGC
TTGAAATTTTGTTGATATGCATATTAAATAAAGACACCGCAGAGGACACAAAATAGGGGA
TCAACAAATAAACAACCATCGGAGTATGACAACAAGAGAAACTATTTAGATTCTTTAGCA
GGAACATCCTTGAGGACTTTATGCTCAGTAACAACATCCTGATCATCCTTCTTGAAAACT
TTGAGCTCAGCAACTGCATCCTGCTCGTCCTCCTTGAGAACTTTGCGCTCAGCAACAACA
TCCTGATCAACCTTCTTGAAGGCTTTCTGTTCAACAGCAGAATCCTGTTTGTCCTCCTTG
AGGACTATGTGCTCCGCAACAATATCGCAATCATCCTTTTCGGAGGCTTTGTGTACATCA
GCAGAATCCTGATCATCCTTCTTGAATACTTTTTGTTCAGCAGCAGCATCGTTATCAACC
TTCTTGAAAAGCTTGTGTGCCATATGCTGTGCAAAGGTGCGAGGTGGGAATTGAGATGGC
TCAGCCTCGGTGACAGTCTCAGGTAGGGGCTTAAGCATAATCTTCTCCTTTGGAGGCTCA
CAGAAAATAGCCCATGAAATCCTTACTTTCTCTTTGTTCACAACCCCTCTGTGAAGAATG
CTCTTGTACTTTCCATTGCTTAGGATTTCAATGGTATCCCCAATGTGCATAATTATGGAA
TTAGGCACACACTTTGCAGTTACCCACTTCCCTTCATAAAAGAGTTGCAAGCCAGGCACC
ATATTGTGGAGGATGAAAGTCAGTGCACTCACATCAGTATGAGCTTCAACGCCAAGTGCT
AGTTCTGGTTGGGGACATTTGGGGTAGTAGTTAATCTTCATTTGAAGCAGCAGGTCTTCC
ATGCCTCCAACTTCCTTTTCTAGTCTTCCTTCTTCCAATCCCAACCCAATCGAAAGCACT
GCAAAAATCTTTGTTGCTAGGTTCCTGATCTGCTTGGCATATTCACTTGTTGCTGGACTG
CAAAACAGAAATGTTTAGCTTGAGGAATCTTAGTAGCTCAGTTGGTTATCTACCTTCACC
TTCACCTATGTTGGTGGAGGTAGTAGACCTCGGTGGATTGGTCGAGGCAACGCAAAAGCG
AGCCCTGACACCACCATTGTCAAAAAAGAGAAGATTGAAAACTCTGCAATCATGAAACTA
TGTAAAGAAGCTTACATGTAGTCAGCAGGGGTTTTAGGCCAGATGGCCATGTCGCGCTTG
TCCTCGGGGAAAACACAATGAAAGAAGTAATCCTCCCACTCAAGCTGACCACAAGCACTA
TTTGCTAGCTTGCTGCCATAGCCTTGGACATTACCAGAAGCTTGATCATTTGCATACTTC
TCCTTCTCTTCAACAGGTAAATCAAAAAAGGTACTTCCAGCAACCTTGACTCTATCAATT
AGCTCATCCGATATCCCATGGTTAACGAGGTGCATTACACCCCACTCCACTGCTGCTTTC
TTCAACTCCTGGTGGCATTTTTCGCGAATTTCCTTGTCCTCTGAGTTGATTTCTTTCAGA
TTAATTGTCGGTACTTGAGGTCCTTCATCTTTCTTCTCATCCTCAAAGATGTTTCCTATA
CCATTTAACTCTTCTTGTGGCCTCACATACTCTTTAGGAATGACTTGGATTCCACTTTTA
GCCAAGCTTTCAACTCTTGAAGGAATTGGAACCACTTCACTCACCATATTTGTTACGCGG
AGTACTTATTTAGAAGTAGACTGAATACCAACTCAATCTCGAAAAATAGAAGTACAAGCA
ATAAGAAAAAAAAAATTCCCTTTTTTTAAAAAAAAAATTCTTCCCCTTTATGGTTGATCT
TGTTGAGGTTTATATTGTGGATGCCAAAATAGGTAGGTTATGTTATTTTGAATGGAAGAT
AAAGCTTAAACATTCAACAACCATGCATGCACGTGACTCATAGCTAACTTTTTTTTTTTG
GTTATGTTAAAGGTTTTCAGTTTTTAGTTTTACCTAAAAATAGGAATGGTGGTTGGCACA
CAATTTTATGATGTTATAGGTGGAAACAAATGACTGGTGGCTGGATCTAGTTACATGTAT
GTTTTAGTTTGGTTA
