Microarray Probes on PGSC0003DMT400057502
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_15299_PI426222305 |
JHI_St_60k_v1 |
ATTTCTTTGTACTGTTCACAGAAACGACCGAAGCCTTTTTGGCCAACAAGTGCAAGTCAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400057502
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400057502 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G27020.1 |
+1 |
0.0 |
846 |
376/496 (76%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523 |
Transcript Sequence (2122 bp)
>PGSC0003DMT400057502 2122 pgsc_dm_v3.4
CTAAATTGACACTCCCAAAACAAAGAAGCTTCATCCATGGCTGTAATCTTAAAAAATCAC
TGCTTATTAATTATTGTATTGTTCCTCTGTTGTTTCTGTCCATGGCGGCAGATAAATGGG
TATGAATCACTATTTCATCCAAAAGATATTCTGCCTCTGTTACCAAGACAGGTATCTTGG
CCTGTTATCAATTCTCTTCATAGTGCTGTGGACCTGTTGCCTGCTTTTATGGGGGCTGCT
TCAATTGAAGGGAATAATACATTGGAGTGGAAAGGTGCTTGCTTTTTCAAGAATATTGCT
TGGTTGGAGCTTCACAACAAATCTAAAAGTCAATTTGGTGGTGGTACCCTTCATATCAAG
GTGAGCAATGCACACAGTTGGACATGTTTGGACCTTTACATCTTTGCAACCCCATATCGT
GTAACGTGGGATTACTACTTTTTGTCTCGTGAACATACCCTTGAAATCAAAGAGTGGAAG
TCTGAAGCTGAGTTAGAATATGTAAAAAATAGAGGGGTGTCCATTTTCCTATTGCAAGCA
GGAATGTTAGGAACCCTTTCAGCAATATGGAATGCTTTCCCCTTGTTTGTCAATAATGGA
TGGGGCGAGAAGTCAAATATTGATTTTCTAGAGAAACATATGGGTGCTTCATTTGAAGAA
CGTCCACAGCCGTGGGTCACAAACCTTACAACTGATGACATTCATTCTGGAGATTTTCTT
GCTATATCAAAAATTAGAGGTACCTGGGGCGCTTTTGAGACTTTAGAGAAATGGGCAACA
GGTTCTTATGCAGGCCATACTGCTGTTTGCTTGAGAGATGCTGAAGGAAAACTATGGGTT
GGCGAATCTGGAAATAATAATGACAAGGGAGAAGATGTGATTGCTATATTACCATGGGAT
GAATGGTGGGAGTTTGAGCTGACAAAAGACAACACCAATCCACATATTGCAGTGCTGCCT
TTGCACCCTGATCTCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGC
ATGGCAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGAT
GGAAATTACCCACCACCCGTGGATGCTCATCTGGTGGCTTCTGTCATGACTGTTTGGAAC
CAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTCGGA
ACTCAGAACCTTAGTCTTCCCAATATACTTGTTGAAGTTGAAAAACGTGGATCCTCTTTC
GCCAAATTGTTGGCTATTCCAGAGCAAGATGATTGGGTTTATAGCGATGGCAAGTCAGCA
TCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTGTTTGGTGAATTTGCA
AACTCAATTCAGGTTACAGAATTCACGATAAGAGATGCTTATACTCTCAACCTTTTTGAA
AACAATTCAAGCCGGTTGCCAAAATGGTGCAATGCCGATGACACTGTGAAGCTTCCTTTC
TGTCAAATTCGAGGAAAGTACCGTATGGAACTACCTGGATACAACAGTATGGATCTGTAT
CCCCATATGAACGAAAGATGTCCATCTATGCCTCCGAAATACTACAGACCTCAAGGTTGT
TGACAAGGTTTACCCCATCTTCCTCTGTAAGTATCAGAGGTAAGTATTGTTGAAAACATA
AATACAAGTCAGCTTCTTCTAACAGCTTAAGCTTTTAGACGAGATGGTCACACACTTCAA
CAAACATATCGCATGTAGTTTTCACTCATCGAGCAGTTCTCGAGGAGTTGTACAATGCCT
AGGATATACAAGCTAAGGTTGCTATTAGCCATTTATGTTGCTCTTATTCAAGAGTTTGTA
CAAAGTTTGACAATTTCCTTAGTTTTTATTATACTGAGTATGTTGTTATTTAGTTTTTTA
TGGAACGAAATCGGGAAAATGAATCCCGAAGAACTTGTAGCAAGTAGCACGTAACCGTGG
AATTAGTTGAGGTGCACGTAAACTAGGTCTCTGATATTTATATTTGCTTATTCATTCAAT
TCCAAACAGTTTGGAATTACTCATTTCTTTGTACTGTTCACAGAAACGACCGAAGCCTTT
TTGGCCAACAAGTGCAAGTCAA
