Microarray Probes on PGSC0003DMT400057397
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_15085_PI426222305 |
JHI_St_60k_v1 |
ACTCTACTTTATTAAAGCGAGATCTTTGTGCAACGAGCGGCTCATCGAAAGTAATTAGTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400057397
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400057397 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G13130.1 |
+1 |
3e-11 |
62 |
58/192 (30%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | chr3:4223008-4223613 FORWARD LENGTH=201 |
Transcript Sequence (920 bp)
>PGSC0003DMT400057397 920 pgsc_dm_v3.4
CAAAAATATCATATATAGAAAAAACATATTTTGACAAAGAGCTAGAGGAATGAAATGAAG
TACCAAAACTTATTACAAAATTTGGCCAAATTTATGGAGAAATTCACTCAACTACTTGCT
TCAATTTCTTTATTTTCATTCCTATTTTCCTACTACTCATCTTACTTCTCATCCTTCTTT
ACCTATTATTATTCATTAAACTTTTCATTTTCTACATTTCCTTTCCACCTTCTAAACCAT
GATATGGATAAAAAATTTGTATTTCTAATATGCAATGGTATATTCTTAGTCCTCCTCGCT
AATACTTCTAGCGAGGAGGAGAAGGAAGAAGAAGAAAAAGAAGAAGATGATGGATTCTTG
AACGAATTTCAAGAATCCAAATTATTACCTCTATGCATTGGTACTCGAGCCTCATATTTA
GAAACAACAAAAGAAGAAGTACATGCACAACAATGCGAAGATGAAATGAGCATACAACTC
AGTAAGTCTCATGAAGTACCGTTAAACGTTGAAAACTCAATTATGACAATAGTGGAATAT
AAGCAAGATGAGTCAACGTTAGAAGGGGAAGAATGTTCTACAACCTACGAGGTAGATAAT
TATGAAGAAAATGATTTTTTTACTGAAGAAGAAAGTGATGATGAGCCATTGAATAAGTTG
AGTAATGAGGAATTGAATAAGAAATTTGAAGAATTCATAAGAAAAATGAAGGAAGAAATT
AGAATTGAAGCTCGTCAACAATTAGTCCTCGTAAAATAATTAATCAAAATGTCGAGCTGT
GTGGAAACAGTCACTAATACTTGTATTAGAGTAGACTATCTACATCACACCTTTTGAAAT
ATTACAAACTTCTTCAGACTCTACTTTATTAAAGCGAGATCTTTGTGCAACGAGCGGCTC
ATCGAAAGTAATTAGTCAAA
