Microarray Probes on PGSC0003DMT400056911
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_15244_PI426222305 |
JHI_St_60k_v1 |
GCAGGCAACTCTTAGCTTGTTTTACTTCCATTGTTCTCTTCTTCTTTGCTAACTCTGATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400056911
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400056911 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G56020.1 |
+1 |
2e-69 |
231 |
194/427 (45%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12970.1); Has 3011 Blast hits to 958 proteins in 192 species: Archae - 0; Bacteria - 193; Metazoa - 479; Fungi - 286; Plants - 158; Viruses - 8; Other Eukaryotes - 1887 (source: NCBI BLink). | chr1:20952216-20953412 FORWARD LENGTH=398 |
Transcript Sequence (1581 bp)
>PGSC0003DMT400056911 1581 pgsc_dm_v3.4
AGCTACCTACTCTCTTACTTTGCATCTTTTTGCATATTTTTTGGGATCTTTGACTCTTTC
TTTTTATATATATATATATTCCATTCTGTAATCGTTAAGTTAACGTTTCTTCTATTTGTA
TGTACGCCGGAAATTATGGCTTCAGCATGCGTAAACAAAATGGGTATGTCGCCGGAGAAG
TTTTTGGATTGTTCTCCGGCTGCTAAGTATAAGTCATATGGTTGGTTAGGTCCAAGGATG
TCATTTAGTAGGGACGGCGAAGGTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAA
AATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGTGGATTTTGAGTTT
TGCCTTGAAAATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTCGATGGAAAGCTG
GTGCCGCTTCATCTCTCTATGATCCGTCCTGCTGCTACGACGTCGGCTGCTGTTTCCGCT
GGTGTAAGATCGCCGGATACACCTCAAATTCGGATGAGAAATGAGATTTGTAATGCGGAT
CCTTATTTGTTCTCTCCGAAAGCACCGAGGTGTACTACACGATGGAGGGAGCTTTTAGGC
TTGAAGAAACAGAATCAGAACAACATTAATGCCAAGCAGGAAACTCAGAGAACGTCGTCG
TTACCGAGCAGTGCTGCTCATAAATCCCTGAAAAATTTTCTTCATCGCAACTCAAAGTCC
TTAAGCTCTTCTCTAGACTCGTCTCTTCACCTTCCGTTGTTGAAGGACTCCGATACCGAG
TCCGTTTCAATTTCTTCTCGATTATCCCTTTCGTCTTCCTCTTCTGGCCATGACTACGAT
GATCTTCCTAGACTCTCCCTTGATTCAGATAAACCAAACAGTTTCTCTCGAAATGCAAAT
CATATCTCTAATCACCGCCGGGTTCGAGTTGTGAAGCATAGAGTGTCATCATCTGATAAT
CCCCTTGCTAATAGAGCTAGCAGAAGCCCCGTTCGTAAACAATCAGACTCTACTGTCACC
ACTGTTCGAGGAGCCTCTGTTGATAGTCCTCGTATGAACTCGTCGGGGAAGATTGTTTTC
CACAGCCTAGAAAGAAGTTCAAGCAGTCCCAGCACCTTCAATGGTGGACCCAGGTATAAA
CACAGAGGAATGGAGAGATCTTATTCAGCTAATGTCCGTATTACTCCTGTTCTCAATGTC
CCCGTTTGTTCCCTTAGAGGTTCTTCAAAATCAGGGGTCTTCGGATTTCCCCTGTTTTCT
TCTTCATCTTCATCTTCTGCTGTAACTGGAAACAAAGCAGGACACCATCACAGTAACATC
AGACCCAGAACAGATCGCATCAAAGAATGAAAGTTTTTTAGGCTAGAAACTTGGTAATCC
TTACCCTTTTTCCGTTAGATTTTTGAGGGGGGTTTTTTCATGCAATTTTTCCAGATTTCT
ACAGGCTTAGAAAAAAAAAATCATGTAAATATGCAGGCAACTCTTAGCTTGTTTTACTTC
CATTGTTCTCTTCTTCTTTGCTAACTCTGATGTTGAAAGCTAATGTTTTTGAATTTTAAT
TATTTTTTTAATGAATCTTAT
