Microarray Probes on PGSC0003DMT400055964
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_23788_PI426222305 |
JHI_St_60k_v1 |
CGCAAGTGGTTTCATTCATTAAATTATCATTAGTTAGCCAGCCCACAATGTCATTTAGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055964
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055964 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G54200.1 |
+2 |
5e-19 |
88 |
84/234 (36%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). | chr1:20235855-20236955 FORWARD LENGTH=366 |
Transcript Sequence (1369 bp)
>PGSC0003DMT400055964 1369 pgsc_dm_v3.4
CAACCTTTTTCTTGCTTCCTTATTCTCATTCCTTCACTTTTCTCATACACACAAAAAAAA
TAAAAATTGAATGTATAATATGGAGAAGGATAAGTTGTCTAGGAGACATCACAAAAACCC
TTCATTTTCATCTTCGCTTCTTGACGAAATCTACCGCTCCATTGATGGTTATGATCAAAG
AAGAGAAGATTTCAAATTACCAAAATTAGAAACAAGAAAACAGAGCAGCAGCGCCAATAT
TGGACTGAAACCGAAAGGGGTTGCCAATATTTACAACAAGAAGAAGAGTATAGAAGATGA
AGAAATTGCTAGTTTTCGAAGGGCTTGTTTGATTGAGAAATGGATGGAGAAAAAAGTGAA
AGATAAAGCACGAAGTGAATTGGATAGTATTAATTATGATTCACTGTTTTTCAGTTCAAC
TTCATCTGAATCCAATTCTGGTACTCTCTCTGCATCTTCATCTGAACCCGACTCTTTTTA
CTCTGAGAAATCTTCTTCTTCATCAACAACAACAACTTGTTTTGCTGCATCGAGAACTAG
ATCCATTAGAAGAGCCAGTGTTTCACCACGTAGAGGTACTAAACTCTATTCATTTGACAA
TCAACAAGCAAATAAAAATGAAGAGAGCAATTTGATAAAGTCGAAATCAACTGCTTTGAA
GAAAGTGAAACAGCCCATTTCACCAGGGGGTCGTCTTACTAATTTTCTCACTTCCATTTT
CAATAACAAATCGAAGAATTTGAAGGACCCAAATGGCGGAAACAGAGGAGATTTTCATGA
AGTAGATGACAGGAATTCAAAATCTTCTTCAATTTGTTCATCATTTTCAAGATCCTGTTT
AAGTAAAACCCCACCAAAATTCTCTCAAACTGCTGTCAAAAGGACAGTCAGATTCAACCC
TGTTAGTGTTATTGTTGACGAAGATTGTCGTCCTTGTGGTCATAAATCCATATATGACCA
CGATTCAGACAATCTTCGTCGGCCCAAATCCCAAGGAAATGCAGAGAAGAACAGGAAATT
TGAAGTGACAAAAGTTGATTCATTAAAGAGCTATAAGAATGATTACATTGTTGATTACGC
AGATGAAGATGATGATGATGCAGCAAGTTGTTCAAGTTCAGATTTGTTTGAAATTGATCA
CTTAGCATTTTTCGGTAACAAAAGATTTTGTGACGAACTGCCTGTCTATGAAACCACATA
TGTTGATACCAATAGAGGAATCGCAAGTGGTTTCATTCATTAAATTATCATTAGTTAGCC
AGCCCACAATGTCATTTAGTAAGAAAGCTATTTGAATCTTGATGATAATATAGATCAATT
AATTTTTCCAATAAATCGACTTTTATTATTCTGTCCTTTTTAGAAGTAC
