Microarray Probes on PGSC0003DMT400055642
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_45759_PI426222305 |
JHI_St_60k_v1 |
CACCTTGAGATTAAGCTTTGTTTCTGGTTATATACAATCTCTCTGATGTACCATTTTGCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055642
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055642 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G13340.1 |
+2 |
3e-100 |
328 |
152/231 (66%) |
Transducin/WD40 repeat-like superfamily protein | chr3:4332370-4334603 FORWARD LENGTH=447 |
Transcript Sequence (3596 bp)
>PGSC0003DMT400055642 3596 pgsc_dm_v3.4
AAAAAAGAGCCTAATATGTTGATGACACTTGCACAATTATATACCCAAAACTTCAAGAAA
TGGGTAGCATCATAGCGGCAAATTAAGCCACACATATATATAATAGTAATACATTGCAGC
AGAAGAAGAAAAAATCTATTTTGGGTATTTTTGAACGAGCTATTTTGATCCAGAAAAAAG
ACAATCTTTTGCTTGAAAGGTGTGGGAAGGGATGCCTCTTGAAAGGGTTGAGCAATTGGA
TTACATGGCAGATGACCAGGAGGGGACTGATTCATGTGATGAATTTGAGGGGGAGTTGGA
TAATGAGGAAATAAACCTTGATGACGATGATATGCCAACAAAAGTGACTGATACATCAGC
TGCACAAGCAAGAAAAGGGAAGGATATACAAGGTATCACATGGGAGGGATTGAATGTAAC
CAGGCAAAGCTACAGATTGACAAGGCTCGAACAGTACAGAAATTATGAGAACATCCCTTT
GTCAGGGGAAGCTGTGGATAAGGAATGCAAACAAGTGGAGAAGGGTGGTAACTACTACGA
ATTCTTTTACAATGCAAGATCCGTGAAGCCTACGATACTCCATTTTCAGCTAAGAAACTT
GGTCTGGGCAACTTCAAAACATGATGTGTATTTGATTTCAAACGATTCACTTATGCATTG
GTCATCAATTTCCCACAACCTCTCAGAAGTTCTCAACTTCTCTGGACGTATAGTACCGAC
AGAGAAATATGCAGGAAATTTGTTAGAGGGTCTGACACTGACCCAAATCAGCACGATGGC
GGTGAAGAACCGTTTTGTGGTTGCTGGAGGCTTCCAAGGAGAACTCATTTGTAAGAGTTT
GGACAAGCCAGGGGTTAGCTTCTGTGCAAGGACCACTTATGAGGATAATGCTATCACAAA
TGCCGTTGAGATATATGAAAGCGTCAGTTGTGGGCCTCGTTTTATGGCAGCCAACAACGA
CTGTGGTGTGAGGGTGTATGACATGGAGAAGTTTCAGCAGATGAACCACTTCCGCTTCCC
TTGGCCAGTGAATGTCAGTTTTTTTACGTGCTTTTGCTGCAATCTTTTGTTCTTCCCTTT
TCTTTGCTTTTTTTTGAACTTGGTAACTTTGTATTATATCACAAAACAATACATGGGTTG
TATTGAAACCTTATATACAAATGTACTCCCAATTTCACTTCTCTATGACTAGATTGAGTC
TAGGACATCAATAATAGAGATAGTGTCATTTGAGTATAGTTGGTTACACCAAAAAACTAG
AAAAAGACGGCAGTTCAGTTTAACTTTCTGCACACTGTTCACTAAGCTCTCAAACCATCT
TAAATTCCTCTCTTTCCAAATAGCCCACCATATAACACTTTTCTTTGCTTTTTTTGATTT
CCTATCATTAGTTACTGTAGTAGTTTTGGTTGTCCGTGAAGTATAAATATACTTGCTTTT
TCATACAAGTGAACTGGCAGGTTGTGGAGAAGTTCCAAACTGGTAATTGTCATTATTCTC
CTCCTCATCATCAACATTGTCATGCATTGGGTGTTAGTGGGATAGAGTAGTTTCATGAAT
TTCTAGTGTAAGTTCTTTTTTTAATCAAATGAAATTCTAGTATGAGGCTTTAGATGGACT
GCAACTTTCTGATTTAAATTGAGGCTGGAAGTGGTTATTTAATAATTCTTCCTTGTAGGA
CCTTGTATTGTGACAGCCCAACAAGGGGCTTTTAGTATCTGAGTGACCTCAATGGGTTTT
ATACATTCAGGTTTGGTGGTAGATTAGATAGGCTAGATGAAGGCCAAGCGGTTGAAGATA
AATCCCATCATTCTCATTTGTTTCATCTTAGAGGACCAATTTATGGAGGGTGAATATTTG
AGATTTGGCAGTGCCATAGAGGTTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAAC
TTCTTATATTGTAGATTGCCAACATGATTGCTTTTTCTGCTGACATTCTGGAATACCCCT
GAGATACTCTTTTATGCTCAATTTCATGTTTATTTTCTTAACTTGTATGCTCCTCATGGT
TGTATTTGTTTATCTACTATTTTGACATCGGAACTTGTTTCTAGCGAGCAATTATTTTGT
CGTGCTTTAATGGGTTATTGAAGTTTTTTCATTTGCTCGAAGTCAGTCGTCATCAACGCA
CATAGTGGTTTGTTGTTGTTGTAGTAGTTTTTGTACTTCATATCAAGTAGTTACAACAAC
TTTGGATCTATATTTCCTCTTATTTGAAGTTGAGATCAATCATCAACGAGCTGCCTCTCC
GTAGCTTCATTTCTCTTTTAAGATTTATAAGCCAACATCACATGTTGATTCAATCAACCA
GGTATCATATCATAGATAGAATGCTTTTTTTTCTAATTGCCAAGTGCGAGTGGCGTTTTC
TTTTGTTATAGAATCTTCTATTCTCTTCTTTTGCTTACACTGATAGAAGAATATTACATC
CTTAGATAGTAATACCCCCTACTTGAGAGATGAACTGGCATGTACATAGTGGAAACCCGC
AGGCTGTTGTCTACTATCAAGAAGTTCCGTTCAACTTCCTCTAGTTTCTTCAGATCTAGT
ATGAGATTTTGCTATTAATAAGCAGGGATTTTATTCATTGGACTCAGGACCTTGTCTGTC
GAATCACATTTCCTCAGAGATTATAAGAAAGTAATAGTAGGGGATATATCCGAATAGATA
TTCATTTCTCTCCAAGTTTCATCTGGATTAAGAATTATTTCTTCCTGTCTACATTCTTTA
TGTGAACAGATATTTCAATTTTGTTTGAAGTTGCATCCTTCATGAGCTCATGTATTTATT
AATTTCACTGGTAATTGATGCAGCACACCTCGATGAGCCCAGATTGCAAGCTTTTTACTG
TTGTTGGAGATGATCTAAATGGTTTACTTGTTGATTCCCGCAATGGAAAGACGGTGGCTT
CAATTGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGCCGTACAT
TTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGT
CTACTGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATG
GACAGTTCCTTGTAGTGGCTGAACCTGCAGATTTTGTCCATATCTACAGTACCAAGTCAG
ACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGTC
CAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATACGGAAGCTTGCTCGAAT
ACAATAGAAAGCATACGTGTAGATATCTTGATTCGTTAGTGTAATTTTTCAACCCTTTAG
GACAAAAGGGTTCTACAGTTCATTCACATTGATCCCCAATATTTTGCATATGATATCAGT
TCTTGATTTATGGCATATGATAACAGTTCTTGATCTTGGCATTACTATGTACAGTTACAC
CTTGAGATTAAGCTTTGTTTCTGGTTATATACAATCTCTCTGATGTACCATTTTGCTAAA
CTTGTACTTTGAAATGTTTGTTCAAAGAGAGATAAAAGAACAACATATTTCTGCAA
