Microarray Probes on PGSC0003DMT400055520
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_28519_PI426222305 |
JHI_St_60k_v1 |
CTGCTAATTCTAGTACTCCATTTGTTAATTAAAGGCCTTCTAAGAAGGCTTAAAGACTTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055520
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055520 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G30080.1 |
+2 |
2e-83 |
274 |
163/328 (50%) |
auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670 |
Transcript Sequence (1445 bp)
>PGSC0003DMT400055520 1445 pgsc_dm_v3.4
GGACAGAATCCGACAATCAATCAATTCTTGCTTAATTTAGTATGATCCTGACTTAAATTG
TGATGAATTGCTGTAGGTGACGTGGGACGAACCTGATCTGCTCCAAAACGTAAAACGTGT
CAGCCCATGGCTTGTGGAATTAGTCTCAAACATGCCTACCATTCATCTTTCTCCCTTTTC
GCCCCCACGAAAGAAACTAAGATTACCTCAACATCCAGATTTTCCTCTCGATGGCCACCT
TCCTATGCCGGCTTTCTCCGGCAACCACCTTCTAGGGCCTAATAGCCCCTTTGGTTGTCT
TCCTGACAACACCCCTGCTGGCATGCAGGGAGCCAGGCATGCTCAATATGGTTTATCATT
ATCAGATCTCCATTTCAATAAGTTGCATTCTAGTTTGTTTCCGGTTGGTTTTCCACCACT
TGATCAGGCTGCAGCAGCACCTCGTAGACCCCTGAATATTCCAATGATCAGCAAGCCATG
CAACAATGAGAATATATCTTGCTTGCTAACCATGGGAAATTCTGCTCACTCTACGAAGAA
ATCTGATATTGGGAAAGCACCACAACTCGTGCTTTTCGGTCAACCTATACTTACTGAGCA
GCAGATCTCTCTTAGCTGCTCGGGAGATACTGTTTCTACTGTTCGTACAGGGAATAGTTC
CTCTGATGGAAATGCTGATAAAATCGGGAACGTGTCCGATGGTTCAGGTTCTGCACTCAA
TCAACGTGGATTAACAGAACGCTCACCATGCGACACATTTCAATCTGAGCCTAATACCGA
GATTGGACACTGTAAGGTTTTTATGGAATCAGAAGATGTAGGTCGCACTCTGGATCTTTC
ATTGCTAGGATCTTACGAAGAGTTATGCAGGAAATTGGCAAATATGTTCGGTATTGACAA
CTCGGAGATGCTTAATCACGTACTTTACCGGGATACCACTGGCTCGGTCAAGCAACTTGG
TGATGAACCATATAGCGACTTCATGAAAACAGCGCGAAGGTTAACAATTCTAACTGATTC
AAGCAGTGACAATGTAGGAATCAGGGAATAGAGAGAACAAGTAAATCTCCACTTTCCTTT
TTCGAACTGTATAGCTGGATGATCGAGTGCTTTGTTCCTAACATCTCAACTCTTTCGGAC
ATGCTGACGATGATGATGTTCAATTTACCTAGTTTATGAGTGGAAAAGTTTGCGTTTTGC
ATCAACGTTTCAATATATTTACTAGTAGTTTTCACTTTTCTTGGGATCGTTTCCGAGTTT
TTGTTCCAAGACAATACCTACAAAGAACAAGATAGAACTTGTTTTTTGTAGGCTTTGTCT
GCTAATTCTAGTACTCCATTTGTTAATTAAAGGCCTTCTAAGAAGGCTTAAAGACTTGTT
CTAGTTTTTATTTTCTATATATCTAATCAGTATATAGTTCAAAACTTTGTCTAAAAGTTT
TTTTC
