Microarray Probes on PGSC0003DMT400051403
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_49481_PI426222305 |
JHI_St_60k_v1 |
CAGATCTTGTGATTCTGAAAGCTCTATTTATGAAGCTGTTCTACATTGCAAAAGAAACCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400051403
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400051403 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G52900.1 |
+3 |
5e-30 |
117 |
93/239 (39%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21452893-21453692 REVERSE LENGTH=235 |
Transcript Sequence (1368 bp)
>PGSC0003DMT400051403 1368 pgsc_dm_v3.4
ATTTTATTATATATAGTATTTATTCCTTATATGAATGAAGCTAGAGTTCTTCATTCATTG
AATTCATAAAATCTTTTTCTCTTTAATTTCTTTGTGATTTTCTTAGTTTCCGTAGTAAAT
TTGATTATCGAGGAGATATGGAAACTTCGCAGTCTCTCTCGATTGAGAGTTTTTCGTATA
GTTGGTTAGTAGATTTGGGGGATTCTTTCAGAGCTGCTATGGATGATTCTGGAGATGATT
ATGAAACTGCTTTTATTGAGATGGATCCTGCACTACCTCCATCAAAGAGGTTTTTTAATG
TGAATCCACAGGATTTGAACTTTGATTTTCCTACATCGGATTCTTCTTCAACTCTTGTTC
ATGCTGATGAACTCATTTCAAACGGCTTCTTGATGCCTCTGTTCATCAAGAAGCCGATGA
AGATGGAGTTGGATTACGATGTAATTGAATCCGACTCCATCGTGAATTCTCCTGATGCGC
AGCAGGAGGATGAATCGCGTTCGTCCTCTTGCAGGAGGGTGAATCGGTGTGTATCGTTGA
GGAGATGCCGGAGTTTGTCGAGGAGGATTTTGTTGAAGTATTTTGATTTTCTTAGACCGT
TTTGCCAGAAAATAAGAAGGTGTAGTAGAATTGGTAGGTGCAGATCAAGTAGTGGAAAGG
AAGTGATGAAGAAGTGGGACTATTGTTCAGCAGCAACATCTCCAAGGACAAGTGTAGCTT
ATTCTGTTGATAATTGGCGCAGATCTTGTGATTCTGAAAGCTCTATTTATGAAGCTGTTC
TACATTGCAAAAGAAACCATTAATGGTAAATAGAGAAAATGAGAAGCAAGTAATATGGGA
TGAGAGGTCTAAAGAAGTTCACATGTGACTGAGGGGTCGTTTGGTGTGAGTGATAGAAAT
AAATAGTGATGAGATAAGAAAATAGTGATAGGATAAAGTTTTTGTATCTTGTTTGGTTGC
CATGTTTGAGATAATTTATCCCACCATTTATATCATAGTGATGGAATAAGTTATCTCGTA
TATATGGTAGAATAAGTTATCCCAAAATAGTTAATCCCAAAATAACGTATCCTGAAATAA
CTTGTTACCAATCAAACGACCCTGAATCCATTAATTGTCACTTTGTATAGCTCTTTCTCT
TTTCTTCGGGATTGTGAATATTTTGTCTTCTTGAAGGAAGTGGAAAAAGCTTGTAAGGAA
GGGACTGTGTCAGCCATGAGAAAAATATTCTTTGGAATTTTTGAAGATACGATATATCTT
CATCATGACTCATACTATTTTATTTTATTTTGTCCTTTTTTTTTCTGCACAATTTCAACT
AGGGAATTGTCTTGCTTTTGTGATTTGTATAAAGTTTTTATGGGAATA
