Microarray Probes on PGSC0003DMT400051348
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_45436_PI426222305 |
JHI_St_60k_v1 |
CCTTATGCTGAGACTAGAAGATTGGAATTTAGAGAAGTTCTTCATCTCAACCTTGCATAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400051348
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400051348 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G40390.1 |
+1 |
0.0 |
523 |
250/381 (66%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 75 Blast hits to 75 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:16867385-16868961 FORWARD LENGTH=496 |
Transcript Sequence (1158 bp)
>PGSC0003DMT400051348 1158 pgsc_dm_v3.4
ATGGATTTTAACAACTCAGATTTTAAGGAAATTTTCAATTTCTCATTTCTTACTTTGGCT
TTCATAATTTGTATCTATGAAGCCCCTGCTGATCTTAGGTCAACATGTATTATTGCCCTG
AAGAATCAATTTTCATGTTCGCAATCTAGAGAAGCATCAAAATTGCTCGTGAGGTTTTTG
GGATCGAATATTGAAGAGCAGTGGATGCGTTCAGTAAATCTAGCGATAACTAATTGGATC
CTGGAAATACATTCTTCTTCTAATCATCATGATCATGCGATGAAAACGCCATGTCCATTG
TTTTCATACTCATTTTCGACACAGGGGCTATGGAAAGTTCAGCTGTATTGCCCTGTTATT
GCAATGGATGCCGAAACATCTACTTGTAGTAGTTTATCTGATGAAAGTTTGAGGTTTTCT
CTCAACTTTCATCAGCTTGAAGGAGTGATCCAATTAAATCATAGAGTTATTGTTCGAGAA
AAGTGGATTGAAGTAATGGTGAACACCGATAACATTAGGTGTGATGTTGTTAGGCTAGTG
AATGAATCACTAATGGCAGAGAGAGGAGCAGGGGTATCAGAGAAGCATTTCCCTTCAAGA
ATCTCATTGCAACTAACTCCAACACTTCAATCCAATGTGTTGAGCATATCAGTAAACAAG
TCCTCTGACAATCCCTTAAGAGAAATTGGAACCGAAAAGACCATTGAAGCAGGATTCGAT
CCACCAAACACTTACATAGGCTTAAAAGTCTCCGCAGGAGAGACAGTTGTTACGACCATG
AAGCCGTGGAAATTTGAGCAATCTGTTAATGGAGATGGTGTAAATTTGAATTGGTTTCTT
CATGATAGTGGAAATGGAAGAGAGGTATTTTCGTCGAAGCCTTCTGTTTTTTCATTAATT
CAGCCAAAGGCTTGGTTCAAGAACAGATATTCAAGTGTTAATAGGCCTTTTACTAAGCAA
GGAGGGGTAATTTTTGCTGGAGATGAATATGGGGAAAGTGTGTGTTGGAAAGTGGACAAA
AGGGCTATAGGGAAAACAATGGAATGGGAATTGAAAGGGAGACTTTGGTTAACATATTGG
CCAAATAAACATATAACTCCTTATGCTGAGACTAGAAGATTGGAATTTAGAGAAGTTCTT
CATCTCAACCTTGCATAG
