Microarray Probes on PGSC0003DMT400050496
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_42073_PI426222305 |
JHI_St_60k_v1 |
GTGTGGAGTCAACCAATGGTCTTATGCTGTTTACTGGAAGATCGGTTGCCAGAACACAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400050496
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400050496 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G27230.1 |
+1 |
9e-80 |
278 |
214/503 (43%) |
transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650 |
Transcript Sequence (4143 bp)
>PGSC0003DMT400050496 4143 pgsc_dm_v3.4
CTCAGCACCACCTATTTTTACCCCCTTCCTCTTCCCTCTCTGATGCTACTACTTCTTCTG
GTGATGAAAAAAAGCACACAGAGCAAAAACACTAACAGCAGCCTCCTCTCTCAACTACCC
ACTTCCCAAAGAAACACATAATACACACAGTGATTACACTTTGGAACACCAAAGATTCTA
TTTTTAACATCCCCAAGAATCAAGAACACACTGAAAACTAATAAAGCTTTGATCTGTACT
CTCTTTAGTCACTAAAGATTCATATATTTGTTGGGTTTTTGTTAAAAATGGAGAAAATTG
TGTTTGTTGTCAACTGTGAACTTAAAGCTTGTGGTATAGTGTAGTTTTCTTCTCCATTTT
CTTGGCTGAGGAAAACAGAAGTTCTTTTTTTTTTCTTCGTCTTTCAGTTTCAACCTTTTT
TTTCTACCCATAGAATGGGTTGCAGGCTAAAATCAGTAGAAAATTTGGATCCTGTGAGAA
AAAGAAGTGGTGGACTGAGAACTAAACAGGCAGGGCGTGGGTCTTGCAGGGGGAGTTAGT
TTCTTTAATCTGTAATTTTTTAGCTGAGAAAATTTGGAAGTGAATAAACAAAAGAATAGT
GCAAAAATGGGGTATTTGCTGAAAGAGGTTTTAAAGACTCTGTGTGGAGTCAACCAATGG
TCTTATGCTGTTTACTGGAAGATCGGTTGCCAGAACACAAAGCTTTTAATTTGGGAAGAA
TCCTATTATGAACCTTCAACATTCTCCGGAATTCATGGAATTTCGGGGGTTGAGAATTCG
GAACTATCATTCCATGATTGGGGGGTTTGCTGGGGTTCGGGGGAGGTACGTAATCCTCAG
CTTATGAATCAAGCAGGGGAGAGAGTGCATATGCTTGTAAACAAAATGATGATGGAAAGT
CAAATCAATATAGTAGGAGAAGGACTAGTCGGACGGGCTGCAGTTACTGGGAGTCATCAG
TGGTTTCATTCAGAGGGTTTTAATAGAGTAGTTCATCCACCAGAGGTCCTGAAAGAGCTC
ACAGGACAATATTCTGCTGGCATCCAGACAATTGCAGTTGTTCCTATTCTTCCTCATGGT
GTCGTCCAATTTGGATCATGCTTGCATATAATGGAGAGCACGAGTTTTGTGGAGGATGTG
AGGATACTGATAAGTCAACTAGGATGTGTCCCTGGTGTCTTGTTATCCGATGAAAATGCA
ACGAAAGATCTGATGGTGAATACTGGCACACCAGTTTATCTGGGAAGTTCAAGTCTTGTA
GATTCTTGTGTGAGCACAAACGTAATGAACTCTGCTCCGGTTATTGCTAGCTGCAGTTAT
CAGGGCAACTCAAGTCAGACTGATGGTTTTATTTGTCAAACTTCTTCCTCTATGGCTGCA
CAAGTTCGGGATAGAATAATGCAGTCTACCGATGCAACATTTCCAGCGTCCAATATGACC
CAATGTTTTGTTGAATCTCATGATGATCGTCAGTTTCACAAAAAAATTATTCCAGAGGTG
AAAGCACATCTGTCTCCTAATAGCCAGCTAATAAATAACGTGATTAAAGCGGAGGTAATT
TCTCCAAGCTCTAACATGTGGATGAGTCAACAAGCTCCTTCACACATTCCGAGGCCTCCT
TTTCATCAGCAATCTTTTACTGACTCATTAACTGTAGATAGCGGCAGCTTAAGCAATGTA
TCCCAGCTTAATGGTTTCACTGCATCTGATCCAAGACCCAATGATGTCCTGATCTCTAGT
TGTCATGGAAATTCAATTTCTCCATCCACTGGAGAAAATGAACTATGTAAACGAGGGGAT
GGGCATCACCGATCAATTCCATTCCCCAATTCTACTGCTGATGCCAATGGACTATCAAAC
ATAATCAGTTCTTGCACAAAGTCGGCTGGAAATGGGCTTCAAACCACGTCAAAATTAAAT
GTTGGGGATGATTTGATAACTCGTAATATTTCTGATGGTCTGAATGCACAATTTATGTGG
GATGAGAGTAATGGAATAGTCGAAAATGATTTGTTTCAAGCACTTGGAATTATGCTAACA
CAGAATGAGCATCCATGTAGTACAAGCAAGTTGGTGCAAGAGGTTTGTGGTGAAAAACAT
GAATATGTGGGGCAGAGTGCATTGCTTGAAAACAACAAGTATGAAGATTCCTGTGTCCAA
CGTCACTCGGGGGATGACCTGTTTGATGTTCTGGGTGCTGATTTTAAAAATAAACTATTC
AATGGAAGCAGGAACAGTTATCAAAGTAATGGACCAGACTCAAACACATGGGATCGGGTT
AAGAGTAACTCTACTTCTGTGATTAGTCAGCATGCTTCTTTGATAGTCAATCAAGGAAAA
TCAGATAGTGGATCATTCTTTGTGGCTGGTTTTGAGCGATTTTTGGATTCTATAGCGTCC
AAGCCTTCTGCCAAGCAGAATCTGGATGATGATGTTTCTTGTCGGACAACGTTGACAAAT
TTGAGTAGCTCCTCTGCTCCAAATATCTCATCGTCCTATGGCCGAGCTGATTTCTCGAGT
CAAATTCAAGGAGATGTATTTGGGAAACCCAAGAACCTTGCAAAATCAGGAACAACGGTT
TCTCGGTCATTTAGATCCGATAAAGAAAAGACAGGAGCTTATTCGCAGAGTAGTTCAATT
TATGGGTCACAAATTAGTTCATGGGTGGAACAAGGTCATGATACAAAGCCAACTAGCAGT
GTTTCTACTGGATATTCTAAAAAGCCTGATGAGACGAGCAAGACTGGTCGCAAAAGGCTT
AAACCAGGAGAGAATCCTAGACCTAGGCCAAAAGATCGGCAAATGATCCAAGATCGTGTG
AAAGAACTGCGAGAAATTGTTCCAAATGGGGCAAAGTGTAGCATTGATGCACTATTGGAA
CGCACGATCAAGCACATGCTTTTCTTGCAGAGCGTCACAAAACATGCGGACAAATTAAAA
CAGACTGGAGAGTCAAAGATTATCAGCAAGGAAGGAGGATTGCTTTTAAAAGATAATTTT
GAAGGAGGAGCGACGTGGGCATATGAAGTTGGTTCACAGTCTATGGTCTGCCCGATCATA
GTTGAGGATCTGAATCAACCTCGTCAAATGCTCGTGGAGGTCAGGACATCTATAAATTAT
GAAGTTTTGACTCTTCTGTGGACTCATTCATTTATTTCAGCTGAGTTGGTTTGTTTTCTG
CAGATGCTTTGTGAAGAACGCGGTCTATTTCTGGAAATAGCCGACATAATAAGAGGATTG
GGCTTGACCATCTTAAAAGGGGTTATGGAAACGAGGAACGACAAAATATGGGCGAGGTTT
GCTGTAGAGGTACACACTTCTGCCAAGTTCAACTGTCTATATGGTCACTGACTAAGTTTG
AGCGTCTTATCTTATCAAACGTGTCAAGTTTAAGGGGCTATCTAGGTGTTATGCCTTCTT
ATAGTAGCCCAAACATTTCAATAATTTGATGTTTAATTACAGGCAAATAGAGACGTGACG
AGGATGGAGATATTCATCTCACTTGTTCGCCTCTTGGAGCAAACATCAAAAGGCGCAGAG
GAATCTGCTAAGGCCATTGATAACGACACAGCAATGATGCATTCGTATCACCAAGCAGCG
TCTATACCAGCAACAGGTAGACCTTGTACTTAACAATGCTCAACAGATGAGAGACTGTGA
TCTTTGTCTGGACGTGTTAAGAGCGAGCAATCAACCATGCTTGCCATGACTAACATTGTA
CACTTAGGCCAACCCTCGTGGTTTTTCTCAAAGCTAATCCTCATTTTTCGCCACAATATC
CAGATTCTCAACGTGCCAAGCCTTTTAGTCCCTTCTCAGGATTGCTTTTGTAGAATGGCG
ATTCATCGTTCGGGCTAGTTTTTTTTTTTTTTTTGGCTCTTGCCCTTTGAAGTACTATAA
TTTTGATTTGGTACAAGGAGAAGGGAAATGGTTTTTATTGTTGTATAGAAAAAGGTGGAG
GGTAATAGGAAGTAAGCTTAGGGTTGTTTATTTTAGCTAGTATTTGTCTACTTAAAATGT
TTTTTCTGGCTTTAATTATGTGTTTTTTGCCAGCTGAAATATTCTTGTTTGCATTATTAT
TTACTTACCTTTGGCCGATATCATTTCTATCATTCTATGGAAAGTGAAAGTCGTTTCATT
CGG
