Microarray Probes on PGSC0003DMT400047220
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_32708_PI426222305 |
JHI_St_60k_v1 |
AAACATGGTGGGGATTTGCTATGTATATATTAATTAATGCTGCGTGTTCTTATATGTGCG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400047220
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400047220 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G00870.1 |
+3 |
3e-78 |
256 |
168/434 (39%) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423 |
Transcript Sequence (1747 bp)
>PGSC0003DMT400047220 1747 pgsc_dm_v3.4
CATGAATCGTCCTTACTCAACGGCTCAAGTTTGATTATCATTATACTCTTTCATCAATTA
AATAATACTACTCCGTACAACTACTAGAAGAAATGGAACAACTACTGGTTTCCTCATCTC
CCATGGCAGCAGCCTCACTACCTCCTCCTCCGGTAGACGTTAACCAGGTGCCGTTAGACC
TTCAACAAATGCTTCAATATGTTGTCAAAAGCCAACCAGAATGGTGGGCTTATGCTATTT
TCTGGCAGACTTCTACTGACGATGACGGAAAAAACTTTTTAGCTTGGGGAGACGGATATT
TCCAAGGAGACGGTGTGGTTAATAACAACAAAGGCAGCAGCAGCAGTAGCAGCAGCTTAA
AGTCACAGGCTCAGTCCGAGAGAAAAAAAGTCATTAAAGGAATTCAAGCTTTAATGGATG
GTAATGGAGATACTGATCTAGTGGACGATGGTGATGTAACTGACACTGAGTGGTTCTACG
TGATGTCGCTGGCCCGTTCTTTCTCCGCCGGAGATGGATCTGTTACAGGTAAAGCTTTTG
GAAGTGATGATTTTTTGTGGATAACAGGTCCGGCCCAATTTCAGCTTCATTACAGCTGTG
AAAGGGCTAAAGAAGCTCAGATCCATGGGATTCAGACTCTGGTTTGTATTCCAACTTCAA
ATGGCGTGTTCGAATTAGGGTCGACTCAATTAATCAAACAGAATTTGAGCTTAGTTCAAC
AGGTGAAGTCTCTGTTCCTCTGTTGTCCCCCTATTCAATTTTTAGAAAAATCAATTTGTT
TTGCTGATATTGGCCTCGTCACCGGCTTGCAACAAGATGACAATGACGATAAACTAAGAG
AAAATAGCAAAAAACAGCCGCAGCCTGTTGTAGCCAAAAAAAAAAGAGGGAGAAAGCCCA
AGGAGGATGCCAATATGGCGGCATTGAACCACGTGGAAGCGGAGAGACAGAGAAGGGAGA
AGCTGAACCACCGGTTCTACGCGTTGCGCTCCGTCGTTCCCAACGTATCGAGAATGGACA
AAGCGTCATTGCTATCAGACGCTGTGTCCTACATCAATCAACTCAAAGCCAAGGTAGATG
AACTGGAGTTGCAGCTAATTGATCACACTAAAAAACCCAAAAACGTAACGGAATCATCAT
CAGCTGACAACCAGAGCACCACCACTTCATCGGACGACCAAGTAATTAAGGCTAATTCCA
CAGCGGCCCCGGAGGTTGAAGTGAAGATAATAGGCACAGATGCAATGATCAGAGTTCAAT
CGGAAAACGTGGATTATCCATCAGCGAAACTGATGATTGCGCTTCAAAATCTACAAATGC
AAGTCCACCATGCCAGCATTTCATCCGTCAATCATCTCGTCCTTCATGATGTTGTGGTTA
GAGTTCCTCAAGGATTAAGCACCGAAGATGAACTAAGGACTGCTCTCCTTACTAGATTAG
AACATCACTAGCTCCGAATCAGTAAGCTCTCAATATTATTAGTACGTACAATCACTAGTT
AATTTTATTACCTTGGTTGTATCGATTAATCATCTCTACATGCTTATCTTTCATGAAAAA
TATATTATGTGATTGAATTACATTATGCTCATCAAGTTAATAATCATCGAAACAATTATA
CAAAAAAATATAACACGTGTTTCCGATTTGCCAGCTATGATTTGTTAACTGTGTGGGAGC
ATCCAACAAACATGGTGGGGATTTGCTATGTATATATTAATTAATGCTGCGTGTTCTTAT
ATGTGCG
