Microarray Probes on PGSC0003DMT400044892
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_34267_PI426222305 |
JHI_St_60k_v1 |
CCTTTTGTACGTGTTATCGATTGGTTATTGATTTGTAACGATTTGGTTATCGGTTTAACC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400044892
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400044892 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G12680.1 |
+2 |
0.0 |
689 |
376/569 (66%) |
unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7475104-7478174 FORWARD LENGTH=575 |
Transcript Sequence (2183 bp)
>PGSC0003DMT400044892 2183 pgsc_dm_v3.4
CACCTTTAAGAATATTCTTTGTATAAATAAAATTAATTTGGACATGGGTTCTTGATTTTG
ATCAACTTCATTGAACCATAATAGTGAAGGTTTTTGTTTTTTGATGGAAGTACCAGTAGG
GTTCTTGGCTAAGCTTTGGAGCTTTATATCTTTTCTTCCTTTCTTCTTCTTGCTCTTCCT
TCTTGGTCTTCTCAAAGGATTAGTAATTGGCCCCGTTGTGACTGTCCTCATATCAGTTGG
GAATTCAGCAGTTGTAATTGGGCTATGGCCTGCACATTTAATCTGGACTTACTATTGTGT
AGCAAAAAGCAAGAGACTTGGATGGGTTTTGAAGATTGCATTACTGGTTTCATTGCCAGT
TCCTCTGATTCTTTGGCCCATAGTAGCCATTATTGGGAGTCTTCTAGGTGGGATAGGGTA
CGGTTTTTTCGCTCCTTTGATAGCAACTTTCGAGGCTATTGGAGAGAGTATCACTTGCAA
GATCTATCACTGCTTCACGGATGGTTGTATTTCCACTCTTAAAAGGAGCTGCACGGTAGT
TCGAGACTTTACAGACTTTTGCTTCCACTCTTATTTTTCTTATATGGACGAGCTTTCTGA
GGAAATATATCCAGATGAGAAACCAATAGAAGTGAAGTTGTCAAAGCTGCCAAGTTGCAT
TTTGGTTTCTCTGCTTGCGATTCCAGTGGATGTCCCTCTTATTACAGCTCTTGCTCTTTG
GAAGAGCCCATTCATGCTGTTCAGGGGCTGGAAGAGGCTACTAGAAGACTTAATTGGGAG
AGAAGGCCCATTTCTGGAGACTGTTTGTGTACCTTTTGCTGGCCTTGCAATCTTTTTGTG
GCCTTTAGCTGTTGTTGGATCCGTGGTAGCGTCCTTCTTTTCAAGTTTTGCTCTTGCACT
TTACAGCGGGGTTGTGGTTCATCAGGAAGACTCGTTTCGCATGGGACTTGCATACATCCT
AGCAGCCGTTTCCATATTTGACGAATACACAAACGACCTACTTGACATGAGGGAAGGGTC
ATGCTTCATGAGGCCTAAATATAGAAGAAATATGATCTCCTCTGGAGGCCTTGACAGTAA
GAAGTTAATTGAGCAGAGGAAGGAAAAAGAAAAAGAAGGATCACGCAGTTTGAAGCTTGT
TTCGCATGGATCACGAACGCTGAAACAGGCAATCCAACAATATACGCCCATGCAGGTATG
GGGTTGGCTCTTTAAATCCTGTGAGGTCAATGGCAGAATACTCCTGCGTGAAGGCTTTAT
AGATGTCAAAGATATTGAGGAATGTATTGTCAAGGGGGACTGTAAGAAGTTAGGTATCAA
ATTGCCTGCTTGGTCCATTCTACAGTGTCTGCTTGCATCCGCACAGTCCGACTCTCTGGG
CCTACTAATTTCTGATGAAGTGGAACTGACAAAGTCTAACTGGCCAAAGGATAAAGTGTT
TGAGTGGTTCCTTGCGCCTCTCTTAGTCATTAAGGAGCAAATAAAAACACTACAATTAGG
AGAAGATGAGGAAATTAGTCTGAGGAAGTTGATAATGTGTTACAAAAATGAAAGGCCAGA
GGAATGGGACAACACCGGATTTCCATCCACCGATACTGTGAGGAGAGCACAGTTGCAAGC
TGTTATTAGGAGGTTGCAGGGCATTGTTGGTTCATTTTCTCGGGTACCGACATTCAGAAG
ACGCTTCAAGAATTTGGTGAAGGTGTTGTATTTGGAAGCAATCCAGACTGGTCTTATTGC
CGAAACTGATGGTGGAAGCTCAAAAGCTGGAAATAGAAATAGGCATCAACGTGTAAAGGG
GGATAAGAACAATACAGATGATGACGGAGAGCAAAACGAGCAAAGCAGCCGAGATGGTGA
TAGTATTGTGTGACCATTCCTGTAGGTAAGATCATGTAATCTCTGTAGTACTTAGGCAGG
TATTAGCCGAGAATCGAGATGGTGATAGTATCGCGTACATTTTCGATATTGAATGAGCTA
CCTTTTGTTTTAGCTTCTGTATTTTCTGGTGTAGGAACCATAGTAAATGCAGTTTGGCTC
TGAGGAGTTGATTTCATTTACCGACTGAAGTCATAAAGCAATTGTTGTAAACTAACATGC
ATCTATGAATTAGCCTTTTGTACGTGTTATCGATTGGTTATTGATTTGTAACGATTTGGT
TATCGGTTTAACCAATAAAAAAT
