Microarray Probes on PGSC0003DMT400044411
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_28295_PI426222305 |
JHI_St_60k_v1 |
ATTCATAGAGTTGTAGCGAAAAAGATAGGACCAAGGATTTCAGTGGCATGCTTTTCAACG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400044411
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400044411 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G06620.1 |
+1 |
2e-86 |
269 |
152/308 (49%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365 |
Transcript Sequence (1089 bp)
>PGSC0003DMT400044411 1089 pgsc_dm_v3.4
GAAAATTCAACCATCTAATTAGTACTCTCTTTGTTCTCAGGCTGAATGGATTATGATCCA
TCAGATGAGAAAAAGGCTATTGATGATGCAAAAGCTGGTGTTAAGGGACTTGTTGATTCT
GGAATAGTCGAGATTCCAAGAATTTTCATTAGGCCACCTCATGAACTTGCTGAGGAGTTG
AATATGTGCAAGTCAACTTTACAGGTTCCGGTTGTGGATCTAAGTGGCATACATGTTGAA
GATGGGCGTAAGAAGATTGTTGATGAAATAAGGGAAGCATCTGAGAAATGGGGCCTTTTC
CAACTGATAAATCATGGGATTCCTTCTAGTGTTTTGGAAGGAATGATTGATGAGACTCGT
AAATTTCATGAACAAGATGTTGAAGTGAAGAAAGAGTACTATTCGTCTGATCCAACAGCC
AGACAAGTTAGATATGATTGCAATCTTCATGTGAACAAAACAAAAGGAAAGATTGCAAAC
TGGAAGGATACATTATACATCTCTGAGCTAGTTTCTGGTCACATTGAACCTGAAGAAATA
CCACAAGTTTGCAGGAAAACATCCGTTGAGTACATAAATCATGTTGTAAAACTAGAAGAT
ATTCTTCTTGGCTTACTATCAGAAGCTCTCGGACTAAAGCCAAACCACTTAAAAGCCACT
GAATGTGACAAAAGACAGTTAATGGTATGCCATTACTACCTGGCATGCCCACTGCCAGAG
CTAACTCTTGGTACCAATAAGCATACAGATCCTGTTTTCGTTACCATTCTGTTTCAAGAT
CAGAATGGTGGGCTCCAAGTCATGCGTGATAACCAATGGGCCGATGATACACCGATTGAA
CATGGTTTGGTTGTTAATATTGGTGACCTCCTTCAGATCCTATCAAATGACAAGTTTGTG
AGTGCAATTCATAGAGTTGTAGCGAAAAAGATAGGACCAAGGATTTCAGTGGCATGCTTT
TCAACGGAGTTTCTACCTCTCCAAAGCTGTATGGTCCAATCAAAGAGCTCATATCTGAAG
AAAACCCCCCACTATATAAAGATTTTCAAGTAGTTGATTATGTTACCAAGTTTTTCTCGA
AGCCTCTCG
