Microarray Probes on PGSC0003DMT400043720
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_25387_PI426222305 |
JHI_St_60k_v1 |
CCACATTTTGTTGTTTGTTGGATGGTGAAATGGAGGTTTATTTTTCATGCTCAATCATTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043720
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400043720 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G69550.1 |
+3 |
7e-37 |
151 |
174/507 (34%) |
disease resistance protein (TIR-NBS-LRR class) | chr1:26148836-26153374 REVERSE LENGTH=1400 |
Transcript Sequence (3267 bp)
>PGSC0003DMT400043720 3267 pgsc_dm_v3.4
TACAAAACATAACGAAATTTGGCATTGCAAACAGTTAGAAAGTAGTCATATTGGCATGCA
AATTTTATACAGATATTTGAAGTTATACTTTGTAAACTAATGAACCTTTTAACAGGGGAC
CAAGGCAATGGAAGCAATCTGGACACATGGTGTTCAAAAATTATGCTTTAGCAAAAAAGC
CATGAAAAACATGAAAAGGCTTAGATTATTATCCATCATTAGTTTTAGTACACATGATGA
CTCCATTGAGTACCTGCCCAACAACTTGCGTTGGTTTGTCTGTCATAGTTATCCTTGGGA
GTCATTATTAGAAAATTTTGAACCTAAGAAGCTTGTTTGTCTTTATCTCCAGAGGAGTTC
CCTGCGTCAATTATGGACCGGAATAAAGGTACAATTGTTGAATTCAATTTTCATTATTTT
TCTTTTTGTCAAATACGTACATAGATAGACTCTCAAATTTTAAATAAGTTTTGGTCTAAA
ATTGTTGGGGTGGTCCAATTAGAGTCAAAACTGAGGGACCAGTTTCGTTGGCTATTTTGT
ATCAAGAATTCGAATTTGATGAAATAGTTGTTGAGCTTTTTAATTTTAGCATAAAAATAC
TTAGTTTAGTTGACATAAAGGATAATTTTATATAAATTGGGTTAGAGCAAATTTGATTCA
ATGACTATGAGAGTAAGATATTTTTTATTGGTCTACTAGCCAAATCAAAATTATCCTGGG
CAGCATCCTAATTCTCATTCTTTCTGTGTTTTGAATAGCAGCATTTGCCGTCTTTGCGAA
AGCTAGATCTTAGAGATTCCGAAAGGCTGATTCAAACACCAGATTTCACGCAAATGATAA
ATTTGGAGTATTTGGATCTGCGTAACTGTAGTGATCTTGAAGAGGTTCACCGTTCCTTGG
AGTGTTGCAGAAAACTCATTGTGTTAAATTTGCAGAGGTGTAAACGCCTAAATAAGTTTC
CATGTGTTAACGTGGAATCCCTTGGATCTCTGATTCTACTACATTGCTCTAATTTGGAAA
AATTTCCAGAAATCTTTGGAAGAATGAAGCCAGAGTTAGAGATCAAGATGAGCTGGTCTG
GGCTAAGGGAAATACCATCATCTATTATTCAGCAATACGCATGTCATCTTACAGAGTTAA
GTTTGAGTGATATGAAAAAACTTGTAGCACTTCCAAGCAGCATTTGTCAGTTGAAAGGTT
TGGTGAAGCTGGATGTGTCATACTGCTCAAAACTTGAAAGCTTGCCAGAAGAGATTGGTT
ATTTAGAAAACTTGGAGGAGCTTCATGCTAGCTTTACTCTAATCTCACGACCTCCGTCTT
CCATCATCCGCTTGAACAAGCTTAAAATCTTGAGTTTTAGATTAGACTTGAAACCTAACT
CCTTTGCCACAAAAGAATCAAAATATAGAGTTTCCTTTGTGTTCCCTAGGGTGAATGAAG
GGTTACGGTTGTTGGAAATTCTGGATCTCAGCTACTGCAATCTAACAGATGGAGGACTTC
CAGAAGACATTGGATGTTTATCCTTTTTGAAAAAGTTGAATCTCAGGGGAAATAATTTTG
AGCGTTTGCCTCAAAGCATAGCCCAACTTGGTTCCCTTCGATCCTTGGACTTATCACAGT
GCATGAGTCTTAAAGAGTTTGTAGGTGTTAACATGGCTGAAGGGTTATGGTCGTTGGAAA
TTCTGGATCTCAGCTACTGCAATCTAATAGATGGAGGACTTCTGGAAGCCATTGGATGTT
TATCCTCTTTAAAAGAGTTGAAGCTCAATAGAAATAATTTTGAGCGTTTGCCTCAAAGCA
TAGCCCAACTAGGTTCTCTTCGATTGTTGGACTTATCAGAGTGCATGAGGCTTAAAGAGT
TTCTAGGTGTTAAGATGGCTGAAGGGTTACGGTCGTTGGAAATTCTGAATCTCAGCTACT
GCAATCTAATAGATGGAGGACTTCTGGAAGACATTGGATATTTATCCTCGTTGAAATTCT
TGTATCTCATTAGAAATAATTTTGAGTGTTTGCCTCAAAGCATAGCCCAACTAGGTTCTC
TTCAATTCTTGGACTTATCATATTGCAAGAGGCTCAAAGAGTTGCCAGGTTTCACGGGGA
GTGCAATAACTTGGATACTTTGGATCTCAGTTTCTGCGATCTAACAGATGTAGGACTTCT
GGAAGACATTGGATCCTTATCCTCTTTGAAACACTTGAAACTCAAGGGAAATAATTTTGA
GTATTTGCCTCATAGCATAGCCCAACTTGGTGCTCTTCAAACCTTGGACTTATCAGATTG
CAAGAGACTTAGACAGCTGCCAGGTTTCACAGGGATGCAATACTTGGATACTTTGGATCT
CAGTTTCTGCAATCTAACAGATGGAGGGCTTCCGGAAGACATTGGATGCTTATCCTTTTT
GAAAAAGTTGAATCTCAGGGGAAATAATTTTGAGCGTTTGCCTGAAAGCATAGCCCAACT
TGGTGCTCTTCGAATCTTGGACTTAATAGATTGCAAGAGGCTTACACAGCTGCCAGGATT
TCCACAGCAATTAGATACAATACGTGCAGATTGGAGTAATGATTGGATCTGTAATTCATT
GTTCCAGAATTTCTCAGCATTGCAGCATGACATCTCTGCTTCAGATTCATTGTCACTAAG
AGTGTTCACCCTCACAGGGAATATACCAATACCAAGATGGTTCCACCATCGGGAAGGTGG
TAGAAGTATATCAGTCAAATTGCCTGAAAATTGGTATGTAAGTGACAACTTCTTGGGATT
TGCTGTATGTTACTCTGGCAAATTAATTGACGCAATAGCTCATTTGATTTGTTATGATGA
GAGGCCAGTGACGCGTATCACCCAGAAACTTGCCTTGTCCAATCATTCAGTAGAAGTTCA
GGAATCTCCTATTCATTTTTTCTTGGTACCTCTTACTGGCTTGTTGGATAAATCTAAGGC
AAATGGAAAAACACCAAATGACTATGGGCGCATCAGGATATTTTCCACTGGAGAAATGAA
GGAGTTTGGACTTCGTTTATTGTATAAAGATAAACCTAAGATTGAGGCGAGTTGCTCATC
TTCTCAGAAACAATGATGAACTAACAGCCATGATGATAGTGAACACCAAGATGAAGCTAG
ACTATCCGTTTTAAAATGAGAATGATCATACACCAGAAGCAACTTTTTTTTTTCTTCAAA
TTTTATAAGAATAATTTTTGTACAGAGCCACATTTTGTTGTTTGTTGGATGGTGAAATGG
AGGTTTATTTTTCATGCTCAATCATTC
