Microarray Probes on PGSC0003DMT400042906
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_35926_PI426222305 |
JHI_St_60k_v1 |
TTTGGTTGGCTTTACATTCTTCATGTCCAACATGCCGGCAATCGTTGCTCGAACAGAACA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042906
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042906 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G10910.1 |
+2 |
8e-40 |
148 |
94/168 (56%) |
RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181 |
Transcript Sequence (3363 bp)
>PGSC0003DMT400042906 3363 pgsc_dm_v3.4
AGAAACCAAAGATAAACAAACACATAGCTCCCCACCACTTGTTCTTTATATTTTCTTTTA
TTCACTAGCATTTTTAATTCGTGAATTTACAATGATAATAGGATCTTTTAATATTCTATG
TTTTTTCTCGTAAGTGTGTTAATTGTGGAGTTGAGTATCTTCTATAAGACTCTACATGAT
TTAAACTTGAATTGGCTTAGTCCAGTTCCAATTTTTGCGAAGAATTGTGTATAATCTTCT
TCTTCTTCTTCTTCTAGTGCAAAAATCCAAGATTAAGAATTTGAAGATCATGGAGGTTTA
TCATCGTCCTTATAGGCTACTTCTTGATCCACATCCTGTAATTCCACCTAGTAGTACAAT
AAGCAAACCTCACCATGGTTACTCAAACGAAGCGAATTTCGATACAAACATGGTGATCAT
TTTAGCTGCTCTGCTTTGTGCATTAATATGTGCTCTTGGATTGAATTCAATTGTGAGATG
TGCGTTACGTTGCAGCAGGAGATTTGCTTTCGAGTCAGAAACTGCACGATTAGCTGCAAC
AGGGCTGAAAAAGAGCACACTGAGGAAACTTCCCCTCTCTGTTTATGGATCAGGAGTTAA
TATTCCGGCTACTGATTGTCCCATTTGCCTGGGAGAATTCGTTGATGGTGAAAAAGTGAG
AGTTTTGCCGAAATGTCACCATGGATTTCATGTGAAGTGTATAGATATTTGGTTGGCTTT
ACATTCTTCATGTCCAACATGCCGGCAATCGTTGCTCGAACAGAACACAACGGCAGCAGC
AGCAGGGGATCTTGAAACTGGATTGAGGCAATCTCCTCCTCCTCCTGCTGCTCCTGCTAT
TGCTGCTGAGGAGATGTCAATGGTAAGATGGAGGTCTTGTTACTATGGCCAGCTAGTCAT
GTAGATCAAATATCAAACCATGATCTTGAACTGCCAGCAACACTGCTACTACTTGATTAA
TCATCATCAGCACTCTGGAAACTGCAAATTTGTTCATAGAAAGCCTAAAGTTTGAATATT
TGTTATGCTTTTTTTTTCTGTTTGTCTCTGTTTGATTTGATAAGGCACATTCATATATTG
ATTGTTAGCCATAAGGAACAAAAGGAATCATTAGCATGTGCTAAAAGAACAGAATCTCTC
TGCACAACTTTTCATCATATAGCTCTTTTCTCCCCTTTTATAGGTCAATTTGGTCCACAG
CATAGTTATTTGCAATTTGCAAAGTAAGGTATCAACTGGACATTTAGGCAACAGACCCTC
TCTGCTACCTCCTTTGACGTTTGATTGATCAGCATTATCTTCTACTTGATTAGGTTCAAG
TAGAAAAGAATGCTCGTAAATACTACCATAGTGCGCAAAGGAACAATGTAGAATGATGAT
TGAGTTGAAAGAAGTCAATTCTAGAATTAAGATTGAATACCCTTTCCACTACTTGCTTGC
AATTGCGATCTGTCACCGCGTTCTAGTCATCAATGAAATGGGTGAAAATCGTATGAGATT
ACGCTCAAGTTCAGTACAAACAAAGAAAGGCAAGAAATTTCCCATTTGCATAAATGTTGG
TAGACAGAATTAACAAATACCTATGCTAGTGGGAGGTAGTAGGTACATAATAAAATTATC
GTTGGCAAACTAATGTGGCCTTTATATAAAACAAAAGAAAAACAGTAAGTGCAGTGCTAG
GAGACAGCATGTGTGCTCATTCAAAGCAACCCAAGTGCCCAAAGTACCGCATCTGTACGA
AGGCATACAGCAGTGTACCTTTTGGAGCCATTTCTTGATATTCTTCTGATAATTGAAAGT
AGAGTGCTAATAGTACTATGATACTGCTTTATTCAAGCTGCTTTCCATGTAGCAAAAAGT
ATTGATTGAAATATTTTTTTTCGCAAAATGAAGTTGCGGATGCTCTTGCAAAATGTTTTG
CAGGCACTTGACTCACAGTTGCTAGAAAAAGCTCTCCTCACTGTATTATACATGCTGTTA
TCAAATTAGATGCACATAGCTACTCAAAACACAGCACATAGGCGTTTGTTTCTACTTACT
TCGATAATGATGAGGTCTATGCAATCGCATCCTTCAATCTCTTCGACTTCTTTCTTGATT
TTGAATCCTTCACAAATCCAGTGCACTTGGTAGTCCTGCAACGAAAGACATCGTGCTTTC
TATATGAGTCCCCGTATGTACCAACTTCTTTATATTTGAAGGCAAGTGTAACTCGGATAC
AATGGTGGACCACTCAAAGGTAAGGTGTAGTATTTGAAGCTGGGTAGCACTCTCCAATAA
ATCAAATATCGTTCTAACATAATGAATGTGCTAACAATATATTACTTCAGGGGTTGTCTA
AACCTGTCATAAGATTTGTGTGGCTATACCATATACTATCAACATTGTCGTTAACTAATT
ATACTCATTAATTTCAGGGACTGCCATTGTCCTCCTGGAAAGCTGATTAGGGGTTTGACA
GGTGATATCGATATATCTGGCTTCCTATGATGTTCAAAAACAAAAATGAAACAATGATTT
GACAGAAGGCAACAAGAAATCACAGTAAAAGACCATCTGATATATATTTGTCTCCAATCA
TACAGAAAAAGAGTTGATCAATTAAGACAAACTTAGCAATCAGTAGTAGTGTTACAATAC
CATGGTTGTGGTTACGGGTACATACTTGATTCACGGCCTCCTTATATTCCTTCCCCCCAA
ATTCTGTATTGCGCATATTGTTTGCACATTAGATGCACATACATACTCAAAAACAGCACA
TAGGAGTATGTTTCTACTTACTTGGGTAGTGATGTCAACACAGTCACATCTTTCAATCGC
TTCGACTTCTTCCTTAATTCTCACAGCTGAAGCCTCCAGAGATTTGTTGTTGCACAAAAT
CAACTTAATTTATTTCAGTGGTGGAATATCTACAAAGCTAAGGGGGATCTCCTTGAGATT
GTCGCATGCTCTTATAACAAGTGTTTCGAGCAGGGAAAGGATTCCTCCAAGGCATCCCAC
CTTGAGATACTTAAGCACGACAGTTTCAAGAACTTCAGTTTATGGAACGTGATATCTCGA
AGGCACCACTCTTTTGATTGAGAAAAACTCGGTTCAGAATCTATAAGATACAGATCTTGT
AACTGGAGATACTCCAGGCTTGGTAATCCCGCAATGAAGGAAATTGCTCTTTCTATATCA
GTCCCGAATAGTACCAACTTCTTTAAATTTGAAGGTACTTGTAACCCGGACACAATTTGG
GGCCACAAAAAGGCGTAAGAGATACCACATAGTGAGGCTTCAGAGGAGGAGTAAATTTTA
AGGGTAAAAACTAACATAGTACCACCAAGTAGAAAAGATTGGTGGTAAAAACTAATATAA
TAC
