Microarray Probes on PGSC0003DMT400042516
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18506_PI426222305 |
JHI_St_60k_v1 |
GGTGAACATGTTCATGTTTAATGTTTTCGCCTACAGCAAAGAGAATTTTCTTGTAGTTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042516
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042516 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G21780.1 |
+3 |
4e-11 |
60 |
44/115 (38%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11567213-11567560 FORWARD LENGTH=115 |
Transcript Sequence (977 bp)
>PGSC0003DMT400042516 977 pgsc_dm_v3.4
CACAAACAAGCCTTCCAACAACCTCTGAATTTCTTCCTCTCTTTTTTTTTTCCGCGAAAA
AAAGAATGTTATACAGAGCTAGTAGGTTCTCTGATAAAATGAGTACAAGTGTGCCGGTTG
AAGTAGGCACAAGGGGAACTATAGGATCACTTTTGAAGAAAGAGATTGAGTATTTCAGAA
AAGTTGAGGTGGATTGTTGTAAAGGGAGTTCTAATAATAAATCTCATAAGAGTTCAGTGG
AAATAGATTCATGTGGTGGTAATTCTAATTGGCCTAGTTTCGGGTTCTTGACGATGAAAT
GGAAAAAGAAGAAGAGAAGAGGTACTGGTGGTGCATTACCTGCAATGTGTTCTATGGTTG
AAGTTTCTGAGAGTTGTAAGATGAATGAAATTCCAGGGTTCAGTTATAGAAATCTCAAGG
TTGATTCTAAGAGATTTGAGGAAGAAATAATGCTCTCATAGGAGCTTTCAATTTTTTGTG
TCAAGACTGAATTCTGTTCTTATTCTTTAGCCAAATATCTTGTGCTTTCTGATTGCCTTC
AATTGCTTGGAATTTGAGAGAATTGTCAATCATCTGGACTTCTTGTAAGCAAGAGCAGGT
AATACCTTGCCAGTTAGGCCTGGAAATTTACATGTATAAACCATAGATGACGAGTACGTA
TAGAATATGATTTAAGTTGCATCATTGGACTGTGTTGTTAATAGGGACTTAGGAGGACTT
TGTCTGCATTACTAGGCCCAAGTATTTTGATTTCCTGTCAAAAGTGAGCAAGATATGAAA
CATAAAACATGTTTTGTGCAGATTAAAAGACCGAAAAACTCTACGTTATCGTCATTGAAA
GAAATTTGCAGTTTTCCACTTTATCAAATAGTGGAACTTGAATATAGTTGAGACTTGAGT
CAGTTTGTACATGAGGTGAACATGTTCATGTTTAATGTTTTCGCCTACAGCAAAGAGAAT
TTTCTTGTAGTTCTTAC
