Microarray Probes on PGSC0003DMT400041766
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_26199_PI426222305 |
JHI_St_60k_v1 |
GCAGTCTCTGTAGTCTGTATTGAACTTATGTGTGGATATGATCTTGTCTGAAATTCTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400041766
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400041766 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G38060.2 |
+1 |
1e-16 |
79 |
40/72 (56%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17873709-17874379 REVERSE LENGTH=136 |
Transcript Sequence (2716 bp)
>PGSC0003DMT400041766 2716 pgsc_dm_v3.4
TGTGACTGTTGGGCGGGTGGGGTGACGACGAAAGAAGGGAGTTTTAGTGAGAGAAAGAAA
AAGGGGTTCACCGGCGGTGACGGCAAATGGATATGCCGGTGAAAAGTTTTGTTTTTTTCC
GGTGATATTACTGTGCTGATCTCACTTTCCGGCGAGAATTTGAGAATTTTCCGGTTGTGT
CACCGTTTGATATATATATATATACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGA
AACAGGTCCGGGTTTGGGTCTGACCCGATTGGGGAAAATGGTTTTTTTAGTGTTTTAATT
CCAATTTTGCCCTCATCAATCATGAGTTTGAGATAAAAAACTTGATTTAAATTTTGTGGA
TTTATCATATTGTTAGACCATTTGAAGTGTTCGATGTTTTCTGGGATTTTTAGTTGAATT
TTAGTGCTAGGAGATGGTGGGGGTTTGAATTTTGAAGCTTTTCTTGAAAAGGGGTTGTTT
TTTGATGATTAAACTGCTTAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAGTTGAA
TCTTTTGTCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAAAATTTGTTGAATTTTT
GTTCTGGGGCTTGGAGTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGAATTTTTT
TGCTAAGTTTGATCAGTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGT
TTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGGTCTTCAATG
AATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAG
TCAGTGAGGGGGGCTAATCTAGCTTCAACTACCAGGAAAGTGAAGAGGAAATGGAAGAGT
AGAGAGGAGAGGAAGAGGGTTGATAAGAACTATGATGTGGTATTGGTGCCATCTGATGGT
GTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCA
CATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCT
TGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATT
GAGAATCTTTCAAATGAGTATCCTGTTGGTAAGAGCTGTAGATATGTTCTTGTTGCTTTT
GCTGCATTGATTATGTAGAGTATATTTCTTTTGGATTATTGGCCTTTGATGACTATGATT
TGAATTTCATTATGCTTGTTTGCAACTGCTCTGACAATAATGACACCTCTGGAGCTGAAT
TTGTTAAATTAGTTATGTTTAGTTATGTGTAGACTGAGAAAAAGATACATGTGAGTTTGT
CGTATTGTTATCCTTCGAGTTACCAAGCGCGTGGTAACAAGCGTCGCATAATAGTGCTAA
AAATAGAAGCCCGACTCCCATCAAGGCGCAGATGGATAGAGTAATATCTTTGGATTTAGT
TAGATATTGATAAGCAATAGTTGCATTGAAGAATAGATAATATTAGTGGAGTAGAACTGA
TGAGCAATATTTGATGCTATCGAACTACAATCAATGAACATGATTTTATCATTTCCATTG
TTGTGCATTGTGAGCCGAGGGTCTTTTGGAAACAACCTCTCTCCACAAGGTAGGGGTAAG
GCCTGCGGACACTCTACCCTCCCCAACCCCACTTGTGTGATTTCTCTAAGTATGTTGTTG
TATTGTTGTGCAATTTGAGAATAAGAACCTCAATAAAATTTCGTTCTAACCTAATGCAGT
GAGTTCTACATACTCCATCTTGGTGATGTTATACCCTTTCAATCCATCCTTTTGGTTCTT
AAAGAAAGCTTAAACATGGAGAGAGCAGTGGACAAAGAACTGACTTTTGCTTTTATTTTT
AACTCTAATGTTTCCCCCTTTGTAGTTTCCAAACACAGACTTGTATATGCCTTCAACCAA
TTTAAAGACTGCACAATTTGTTATGAGTTTTTCTAGATAGGTTACGATGTATCATCTCTA
TGGCAGTCTCTGTAGTCTGTATTGAACTTATGTGTGGATATGATCTTGTCTGAAATTCTT
TTTTTATACTTGCAGAGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATT
TTTGAATATACTGCAGCTGGTCATTTTCTGCGCATTAGGAATTTTCTGAAGCAGGGTCTA
TCTTTTAGTATATGAGGAGGTATGCAAGTTCTGCATCAATATTGAATAGTAGTGGCAGCA
GGTCAGCATTTTCATTTTCGAGAGACAAATAATCAAGTTTATCGTGGCAGTGATCTTTGT
TTCCGGGCTCAAATACACAAACCGTTGTCATCTTTAAACTTTAGAACTGATCAACTTCTG
TTGGTGGGGGGAAAATTTGACATATCAAGCTGTTTTTTTAGTGTAAATATAGCTAATGTG
AATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTC
CAATGTCCAGACAAGTGAAACACCATTGTTTATATCTTGATTATACATTAATGTTAAATA
GTATGTTCTTATGAATCTATTCTGTGGTGGTTCCCTCTGTGCCTGAAAACCAAGAACACG
GGCGGAGCTAGGGTACTGTAAAGGGGGTCTTTCTTCGAAAAATTTCACTATATATGGTCA
AAATTAGTTTTATGTA
