Microarray Probes on PGSC0003DMT400039875
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_8014_PI426222305 |
JHI_St_60k_v1 |
TACGTGGTTTATCATGAGGCAATCTTGACGACAAAGGAGTACATGCAGTGTGTGACAGCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400039875
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400039875 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G13010.1 |
+1 |
0.0 |
1263 |
645/811 (80%) |
RNA helicase family protein | chr5:4122747-4128660 FORWARD LENGTH=1255 |
Transcript Sequence (4889 bp)
>PGSC0003DMT400039875 4889 pgsc_dm_v3.4
CTAATTTGAAAACTACACCAAATAGTGAGAAGCAATATTCCATCTTCCTTCAAATTCAAA
CAAACATATATGGCGGAGAGGGATAGAAGAAGCAAATCCATGGAAGTGAGAAGGAGAAAG
AGAACCAGTAGCGAAGAACATTCATATGCTGTTGCTGCTTCTTCTCCGTGGGACATTGTG
GCTCCTTCTCCAATTCCAATTAGGGCATCGGTAAGATCTTCAACTTCTAAGTATCCTGCA
AAAAATTACAATTTTAGTGCTAAAAGAAATTGTATCTCTGAAATAGGTAGTACAAATGAT
TATTCACGAACTAGAAAAAAAATCCTTGGCAAAAACTGGGAGAATCGTCAGCTTTTGAGA
TCTGGAGCTGTTAGAGGTAACAAGGTGCAAACGGAGTTTGATGATGATGAAGAGGAACGG
AAGGTGATTCTTCATGTTCATGATATAAAGCTGCCTCCATTTTTGGATGGGAGAGTTATT
TTCACTGAGCAAACTGAGCCGATATTGCCAATTAAGGATGCAATGTCCGATATGGCACTA
ATTTCACGAAAAGGGTCAGCTCTTGTTCGGGAGATACACGAAAAACAAAAGAGGGATAAG
TCTCGGCAAAGATTTTGGGAGCTAGCTGGGTCGAAACTCGGAGATATTCTTGGTGTGGAG
AAGAGTGTTGATGAGATTGATGCAGATACTGTTGTAGTGGGTGAGGATGGTGCGGTTGAT
TTTAAGGGAAAAGCCAGATTCTCGCAGCACTTAGCTGTCAGTGATTTTACAAAATCGAAA
ACAATTTCACAGCAACGACAGAATTTGCCCATATTCTCTGTGCGAGATGAGTTATTGCAG
GTGGTTAGTGAAAATCAGGTGGTGGTTATTATTGGAGAAACTGGTTCTGGAAAAACAACA
CAGCTAACTCAGTACCTGTATGAATATGGTTATACAGTTAATGGGATCATAGGTTGCACC
CAACCTAGACGTGTGGCAGCGATGAGTGTTGCCAAAAGAGTTAGTGAGGAAATGGAAACT
GAGCTCGGGGATAAAGTTGGATATGCTATTCGTTTTGAAGATGCCACTGGGCCAAGTACT
GTTATCAAGTACATGACCGATGGTGTGCTCTTAAGGGAAACTCTTAAGGATCCCGATCTT
GAGAAATATAGTATAATTTTAATGGATGAAGCCCATGAGAGATCACTTGACACTGATGTC
CTTTTTGGCATTCTCAAGAAAGTTGTGGCTAGGCGACGTGATTTTAAGCTTATTGTCACT
TCTGCCACTCTCAATGGCGAGAAGTTCTCAAACTTCTTTGGGGGCGTACCAATATTTCAC
ATACCTGGAAGGACTTTTCGAGTTCAAATATGTTATAGTAAAACCCCATGTGAAGACTAT
GTCGAAGCTGCAGTTAAGCAAGCCATGACTATCCATATTGCTGGTGCCCCTGGTGATATA
CTCATCTTCTTGACTGGTCAGGATGAGATCGAAGCAACCTGTTATGCACTTTCAGAGAGG
ATGGAACAACTTATCTCATCAACAAAGCAACCAGTACCCAAGCTGTTAATTCTTCCTATA
TACTCTCAACTGCCTGCTGATCTGCAAGCAAAAATTTTCCAGAATGCTGAAGATGGGGCT
CGCAAATGCATTGTTGCTACTAATATCGCTGAGACGTCCTTGACCATTGATGGAATTTTC
TATGTCATTGATACAGGCTATGTTAAAATGAAGGTGTACAATCCCCGTATGGGTATGGAT
GCTTTACAAGTGTTCCCCATTAGTCGAGCTTCTGCAGACCAACGTGCTGGTCGAGCTGGT
AGAACTGGCCCAGGGACTTGTTACAGACTTTATACAGAGAATGCTTATGAGAATGAAATG
CTGCAAAGCCCTGTGCCAGAGATTCAACAGACAAATCTTGGGAATGTGGTATTGCTGCTC
AAGTCTCTCAAAATTCAAAACTTGTTGGATTTTGATTTTATGGATCCACCTCCTCAAGAT
AACATTCTTAACTCCATGTATCAGTTGTGGTTACTAGGTGCACTGAACGATGTTGGGGAT
TTAATGGACCTTGGACGAAAAATGGTGAAGTTCCCATTGGACCCTGCCCTTGCCAAATTG
CTCCTGATGGGGGAAAAACTAGAATGCTTAAATGAGGTTCTGACAATTGTTTCTATGCTT
TCAGTGCCTTCAGTTTTCTTTCGACCTAAGGATAGGGAAGCGGAAAGTGATGCTGCTAGG
GAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACATTGCTTAATGTTTACCAGCAATGG
AAAGCTAATGAATACAGAGGAGACTGGTGTAATGACCATTTTTTACAGGTCAAAGGTCTG
TACAAGGCTAGGGAGATAAGATCCCAATTGCTGGACATCCTCAAGACACTCAAAATTCCA
CTCACATACTGCGGTTCTGATTGGGATGTTGTGCGGAAAACAATCTGTTCCGCATACTTT
CATAATGCAGCTATGCTGAAGGGGATTGGGGAATATGTTAATTGCAGGAATAGAATGCCT
TGTAACCTGCATCCCACAAGTGCTCTCTATGGATTGGGTTACACTCCCGATTACGTGGTT
TATCATGAGGCAATCTTGACGACAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCT
CACTGGTTAGCAGAATTGGGGCCAATGTTTTTCTCCATGGGAGCAAATGTTGATGTACAC
ACTGAACGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGTTTTGAAGAGT
ATACTCAAGATCAGTGTCAGTAGTTCAATATTGGCTACCACATGGTGGTCGAGGGCTCAT
TCAACGGCCAATAGAACTTAATATACAGGTTCGTATTCAGAATTTAGACGTCTGAATCTT
AAAACATACAGCCTTAGTCTAGGCTCTAGAACAAATGCAAAAAAAAAACAAGGCTGGAGT
TAGTTTAACCCCTCCTATGTCCATATTCTTAATTCTGACTGGTTTGTTCTGCCTTATGTA
CATTAACTTGAATCTTCAGTAGACATGATACTAGCTCTTCCATGCTTGGACGATTTGTTG
GTTCTCGAGTCAAGCATCTTAAGCTTAGGTTGGCTACCGAAAATGCTATTTCCAAATCAT
CATCTTCCCTCATATCTGCTTTGATGAATCCATCCAGTTCAATTTCTGCATTTTCTCCTT
CCATTATTGCAGCTACTGCAGCAGAAAGCAGAATTTCTCCACTTTCCTCTACAATTACAG
CATCTTTTCCGGTGACTAATTCCAACAGTACAACTCCAAAGGCATAAATGTCCATCTTTG
AAGTCACTGACCCTCTCTCAACGTACTCAGGCGCCATGTATCCTGTTGTCCCAACAAGCT
CCCAACTCGTGCCTGATTTATCCGTTTCTTTAGCAAGACTGAAGTTTGCAATCTTTGCTC
GTATGTTGCTGTCGAGGAGAATGTTTCTACTGTTGATGTTCTTGTGGATGTAGCCTGGTT
TGGTAAAGCTGTGAAGATAATGAAGTCCATTAGCTACATCCAACGCAATCTGAATCCTTT
TTTTCCAGCTTATGGTATCTCGAGACTTGGTTCTGGTCAGCCATTCCCTGAGAGAGCCAT
TTTTCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCT
TTATTAGATTGAAGTGATTGATCTTATGCAGCATGTTCACTTCTCTAGATACATCCATGA
TTGCTATTTTGACTGCTAAGATTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTA
TCCGGTTCTTGGAGTCAAAGTTTCGCGTAGCATGCTTCAATTCTTTGAACTTGAAAACTT
TAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCC
TTGGAAATTTTCTATCCCTTTTTTTAAACAAAGCAAGAAGGACGACCCAAGAAACCACAA
GCAGTAACAGAACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATT
TTCCCTTTGAAGCATTAGCTACCGGTGGAGGTGAAAAGGACCTAACAGGTTTTCTATAAT
TCTCATTTCTGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAA
AAGGATACAGAACAGAATTTTCATCCAAGAATCCATTTGATTCAACTATGTTCGTTACAC
TAACATTAAATCTTTTGCCAACTTTAAGGATGTCATCGCCAACGTCAATTGAATAAGTCA
TCAAATACTTTGAGCCTTTTGCAACTTGTTTTGCTGTTGGACAGGCACACCTGAGAGGAA
CTTGCAACTCAAGACCAGGTCTTAAACTGAACTCATCATATTCATTTCGACGTACTAATG
CATTACAGGTTGATAATCCTTGGTAAATATTATTTGCTATCACAAAGTATGTTTCAATAA
GAGGTGATATATAGTACATGGTTTTGGCTTTGATAATACGAACCTGAACAAGAGCAGTCC
ACTGGAATTATAACCTCCTTTTCTGGCGCGAACACTGTAAGCCTCGTGACATTGTTGATA
CGAGTAATCTCAGACATGTTTGAAGACATGAGAGCAGCAATTCCAGGTACTGAATTGTAA
GGATCCCTAGCCTTGAATATGAGAAATGCTTGACAAGTGGAATTTCTTCCATTGCAAGAG
TAATTCGTTTCGTATTCGTTTTTGCAGTTCAATACTGAATTACCTGAGTATTCTTGTTGA
GCTTTGGTACATGAAATTAGAAAGTTTAGTATGCAGAGAATATTCAGAAACCAATTCATA
GCTGTTGTTTTCTTGATTAAGTATATGAACATGGAGGAATTGGTCTTGTGAATATATTTT
GTTGGATTATGTATAATGTAAGTATAAAC
