Microarray Probes on PGSC0003DMT400039867
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_8361_PI426222305 |
JHI_St_60k_v1 |
GGATGCTTGATCTTATGGTTATGTATGAAGCATGAACTATGTTCTTCAATAATGGCTACA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400039867
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400039867 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G47410.1 |
+3 |
7e-13 |
67 |
51/96 (53%) |
unknown protein; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17394818-17395508 FORWARD LENGTH=189 |
Transcript Sequence (1161 bp)
>PGSC0003DMT400039867 1161 pgsc_dm_v3.4
CCCCCTTAACTTTAGGCTGAAGTGAAAGCAAATTCACCACAAATTTAGCATCTTGCTCAT
GACTAAGAAACACCAAGTTTACTTGTATGCAATAAGAAATTCAGAAGTCCATTGCTTTAG
CTTCAGAAAATACCGTACAGGTTCCTTTAGCTCAAGTCTTCACCTTAAAAAGATTAAAGC
CCTCATATTTTCAAGATAGAAAGCCACTTTCAAGCAGAAATTTCAAATGGGAAATCAGAA
GATAGATGACTAACAAGTTCGGTTTGCGGAACTTTTCACCTGCAACTCTCATCAAGAAAT
ATCAGCAACACTTCTAAAAACATGAGCTTTTCTCTTAATCAAGAGTCACCAAATCATTCT
AAGAGATTCAAATTACTTGTCTCAACTGTCAAGGATGCTTTTGCAAACTGCCATTCTTTC
AGGAAAAGATCAAATTCAAGTCCAGAAGAAGATGATCCGATTTGTGACTACGATGATGAA
GTACTCACTTAAAGCCATGTAATTCTTCCAAGTTCAATGCTATTAACTGCTGATTTTCTC
ATATTTTTCTGAAAACTGTTTCGCGGTTTTATCAGCAGGTATTTGTATCAGCAGTGATAA
GTCAATACATGGAGTTGAAATGCAGAAGAAAGACAGCCATCACAACTGACAAGTTTACCT
GGGCTTTCTCTCCAACAACAGGAGATTTCTTCATCTCTGCAAGACTAAGACAAAAAGAGG
AAGATCAAGAAACAGAAGAAAGGGAAGATTTTTACTCTGTTGCTAGTAGTCTTTCTCCCT
GCTCCAATGTTACAAGCTTTGAGGCATTTGTCACAGCTAAGACGGTCTTTTCTCGATCAT
CAAGCTTAGAAAGTATTGACTTCCAGGATCTCAGGAGGCATTCTGTTATCCAAGAATTAT
CTGACTGTGAAGGATGGCCATTTGGTCTATACCGAAAAGCCTTGTTACTTCCACCTTTGC
CAAAATCACCATCTGATTCTTGGTCATGGCGTAAGAGTGCTAGAATGGTTAAGATGCACT
GATAGTTAGCATTTCAAATCAATTACCTCTATTCTGCGAAGCAATTTTACATTTTCCCTT
GCGAAAGGATGCTTGATCTTATGGTTATGTATGAAGCATGAACTATGTTCTTCAATAATG
GCTACAATCTTTGCATAACTC
