Microarray Probes on PGSC0003DMT400039340
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_22324_PI426222305 |
JHI_St_60k_v1 |
CATCTTCATTATTCATGTTCATAAGCCAACCATTGGCTGTTGGTTACAATTTGGTTATGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400039340
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400039340 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G54540.1 |
+2 |
6e-66 |
211 |
125/258 (48%) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:20367702-20368421 REVERSE LENGTH=239 |
Transcript Sequence (1021 bp)
>PGSC0003DMT400039340 1021 pgsc_dm_v3.4
GGTTCATTTGTAAGTTGTTGATCAAAAGCAATAGCGTTCTGTGTTAAGTAACAATTGACA
ACAAATGACAGAAAATCAAAGAATTCATCCAGTTGTGGACATGGAAGCACCACCACCAAC
AAGAACAACACGTCCTTTAGTGCCTCGAGGCTCGTTTAAATCAGAAAAAGGTGATCCAAC
GCGGCTTCAGCAGCCAACAGTGAACCAGCCATTCAGACGTACCGTTCCTGTAATGTATTC
AAGACCACCCACTAAGAAGAGAAGTTGCTTTTGCAAATGCATTTGCTGGACAATTAGCCT
CATCATACTCCTACTCATCATTATTGCAGCAATTGCTGGCATTCTTTACCTTGTTTTCAA
ACCAAAAATCCCTCAGTACTCTGTGGACAACCTCAGAATATCAGACTTGAGGCTAAATTT
CGACATGAGCCTCTATGCAAGATTTAATGTCAGAATCACTGCTGTGAACCCAAACAAGAA
GATTGGAATCTACTATGAGAAAGGAAGTCATTTGAGTGTGTGGTACAAGAACACACAGCT
CTGTAAAGGGTCTCTTCCCAAGTTCTACCAAGGTCATCAGAACAGAACAGTACTCGACGT
GGCCTTAACTGGGCAATCACAATATGGTAATACATTGATGTCTGCAATTCAAGAGGCAGC
ACAAACTGGAAGAATCCCATTAGATCTTAAGATTCAAGTCCCAGTTAGCGTTAAACTTGG
GAAGCTCAAATTGAGAAAGGTGAAAATATTGGGAGATTGCTTGCTGATTGTCGATAGCCT
CTCTACTAATAGTTTGGTCCGAATTAAGTCCAGTACTTGCAAGTTTGGATTGAAGCTCTA
AAAGCTTCAGCATTGTATTCAACATGTTTGTTAGTATTTAATTTAGACTTCTAGTTCAGT
TGTTGTGTATTTTATTTTATTTTTGGGATCTCTACTCTTGTTAGGAGATTTCTATTACAT
TCATCTTCATTATTCATGTTCATAAGCCAACCATTGGCTGTTGGTTACAATTTGGTTATG
C
