Microarray Probes on PGSC0003DMT400039289
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_22392_PI426222305 |
JHI_St_60k_v1 |
CATGGAAACAGATCATGATCTTGTAATCTGACTTTGGGGTTTTGTTTTCCTGTTTTCTAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400039289
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400039289 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G63350.1 |
+2 |
1e-64 |
213 |
140/324 (43%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 103 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:25380216-25381124 REVERSE LENGTH=302 |
Transcript Sequence (1395 bp)
>PGSC0003DMT400039289 1395 pgsc_dm_v3.4
CAATATCAAAAGTTTATTACTCTTACAATAGAAATAGAAATCTCATTTTCCTAAAACTCC
ATAAATGGATGGGAGGGGAGGGTGCTGTATTGCTAGGTACGCAGGAGGTGCGTACGATAT
GTCAAAAGTGGATAGGATAATGCTTAAATTCAGACCTATCGCACCTAAACCAGCAGCAGC
CGGTAGTTCTGTTTCCGGCACTACTACTCCACCACAAAAGACTGAGGTTCCGGTTCGTAC
TGGACGGTGGAAGCGAAGGTATGTTAAGGAGAATAATAAAAATAGTAATAATAGCAAGAG
ATCTAATAGCGGGAGTAGTCCTAGTGGTAGGAAAAGGAAAGCTCCGTCGCCTGAAGAAAA
TGAATCCAGTGGGAAAACGGTGTCTGGTGGAGAAACGGTAGTAACTCTTCCCTTGTTATC
GGAGAGCCCTGAAAGGAAGGATCGTTCGGTTGACGTAGTGAAAAAAAATTCTCCGATCTG
GTTGAGTTTTGGTGGTAACCAAGAGAATAATAATGGTCAGTCCCAGGGGTATGGAGGAGT
GATGTTTCCTCAGCCAGTACGAGTAGTGGGGTCATGGGTAAAGGTGGAAAGCGTGACAGA
CGCGTGGGTGGAAGGGTATGGGCTAGGACGTACGGATGAGGAAAAACTGATAAATCTGGA
GCGGGACAGCTGTCCAGGTTTTATATCAGACGGTTTAAACAGAGTAAGGTGGGCCAACAA
GGCGTATAAGGCGATGGTGGGTGAAGGGGCAGGGGAAGTGGTGGTTTGGCTCGTGATGAA
AGATGATGTACGGCTGCCGGATAACAAATCCACGGCGGCGTTCACTTGCCGGGTTCGGGT
TGTCAGATGCGGGAAGGAGAAGAACTCATTGATTCTTCCGTGTGATGTGTGGAGAATGGA
CGGCGGAGGATTTGCATGGAGGTTGGATACAGAAGCAGCTCTTTCCTTGGGGCGGTACGT
AATTAAAGTAATATCAACTCCACCTGAAGGGTAAAGAAGTAAATCTATATGCCGAACCAC
TAATAATACTTGCCACCTTGTGCTTGTCTACGTATAGAGAACATGCACACTTGCATGTGC
TTTTATCAGAAGAAAAATTGTGAATATCTTTATGGGTTTAGAACTGTTCTTTTTTATTTA
GGTGAGTTTTTATTTTAGTTTTCTTGGTTTCTTCAAGGTGGGGTTTGAGCGGTGTTGTGT
GGTTTATGGAGATCGATGTTTGTTAGGGATACTTGTTGAAATACAGTTACTACTAGTAGT
CGTAGTTGAACCATGGAAACAGATCATGATCTTGTAATCTGACTTTGGGGTTTTGTTTTC
CTGTTTTCTAATTTAACATCTCACATATTTTGTTCAACTATTTCACACAATCAATTTATC
ATTCTCCTTTATTTC
