Microarray Probes on PGSC0003DMT400038352
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_24963_PI426222305 |
JHI_St_60k_v1 |
CAGGCGATTTCTTCGGCTGCTTTTGATAACTCTTGGGCTTGATATGTGAATCTCCTTTCG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400038352
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400038352 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G03000.1 |
+1 |
2e-74 |
232 |
128/158 (81%) |
EF hand calcium-binding protein family | chr3:677388-677885 FORWARD LENGTH=165 |
Transcript Sequence (1141 bp)
>PGSC0003DMT400038352 1141 pgsc_dm_v3.4
AAACAATATAAAAAGTCTCTTCTATGAACAAATGACAATAATCATCTCCAATTCATTTGG
GAGGAAGTTGTCATATTTTCTTTCAATATCAATCCTACAAATCTGTATAGCTTTTCCTTG
TAATTCGACAAATTTGGTGTAGCCATTACCAAGTCCAAGAAAAATAGCTATTCGAAAGTG
ACACAAAATTGAGCAGAGAGTAGTCAAAAGGTCAGTAGAATAACAAGAGAAAGAGGACAG
CACGAATAGCAGAAAAACGAGAGAACCCAGTTGGTTGGAAAAGGGTATCCATTGATATTG
TTTTTCAAGAATAATTCAATCTGCAGATCAACTGTTTGATTTATTGCTTCACAGAGAAAT
ATGAGCAATAAAGCACCTGTTAAGTTAGATGATGAGCAGTTGGCTGAACTGCGAGAAATT
TTCCGTTCATTCGACAGAAATGATGATGGGAGTCTGACCCAACTCGAGCTTGGCGCGCTA
TTGAGGTCCCTTGGTTTAAAACCAAGTCCTGATCAGCTCGAAACTTTGATTCAAAAGGCG
GATAAAAATGACAATGGCCTTGTTGAATTCTCGGAGTTTGTATCACTCGTTGCACCGGAA
CTTCTTCCAGCGAAGTCCCCTTACACGGAGGAACAATTGAAACAGCTATTTAAGATGTTT
GATAGGGACGGAAATGGTTATATAACGGCTGCAGAATTGGCTCATTCTATGGCGAAGCTT
GGACATGCTTTGACTGCTGAAGAACTTACTGGGATGATCAGAGAAGCTGATACTGATGGA
GATGGCAGGATCAGCTATCAGGAATTCACTCAGGCGATTTCTTCGGCTGCTTTTGATAAC
TCTTGGGCTTGATATGTGAATCTCCTTTCGCAGGCCCCTATTCTTAGCAAAATAGTTGGA
AATGAGCGTTGGCGCCAAATGAAGAAGAAGAAGAGGATTTAAGATGCAGAGTTGGTGTTG
TCGTGTGCTTACATCTTAATGTATTACTTCTATCTGTGATGATGCAGCATTATCCTAGTT
TAGCATCCGATAGAACGTTTCTTGCCAAGAGAGACTTTTTTTGTCATTCATTTTCCTTTA
TGATCTATCGTTGTACTTTCTTTAGAGTAAATAATATAGTTTGGGTGATAATTTGCAGTT
T
