Microarray Probes on PGSC0003DMT400038236
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_42212_PI426222305 |
JHI_St_60k_v1 |
GTGTGTCAGTGTGCTTACATTTCTCATGTTAGCAGTCATGTTGTTTCATTTTGTATTCAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400038236
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400038236 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G34930.1 |
+3 |
2e-110 |
366 |
304/946 (32%) |
disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905 |
Transcript Sequence (3016 bp)
>PGSC0003DMT400038236 3016 pgsc_dm_v3.4
CAAACAACTACCACACACAAAAAATACTTTTCACTTGCTAGTCTAAAACATTGCACACCA
TGAAAGTGTTAGCAATAACACTATGGGTTCTCTTGTTTTTTATTTTGACAAATACCAAGT
TTGTTGTTTCTGTAGGGATTTGTAGAGAAAACGAGCAACGAGCGTTGGAGACCTTGAAGA
AAGAAGTATATGATCCCTCGAATATTCTCTCCTCTTGGGTTGTCGGGAAAGATTGTTGTG
AATGGGAAGGGGTCGTGTGCAACAATCTCACTCATCATGTGATTGATCTAAGCATTTCTA
TTGATTGGCCTTATTCGAGATATCTAAGGATCAATAACCTAGAGTGGTTGACAAGTCTTT
CGAGTCTTGAGAACCTAGAAATGGAGAGCGTTGATCTTAGCAAAGCTAATGAATGGCTAC
AGGTTATTAACATGCTTCCTTCTCTTGTTGATCTTCGTTTATACAATTGTAGTCTTCATC
ATATAACACCTCTACTTGATCATAAAAAAATTTCTTCACTCAAATCTCTCGATCTTTCTG
GGAATTACAACTTTAATTCATCTGTTCCAAAATGGGTTTTCAACCTCCCCAATCTTGTTT
CTCTTGACCTGAGTGACTGTAATTTTACTGGCCCGTTTCCTGACGGTCCAGTTAACTTGA
CTTCTCTCACAACCTTCATGGCTTCTAGAAACTCTTTCAACTGTCGTTTACCTAAATGGT
TGTTTGATTTGAATAATCTTGAACATGTTGTGCTCTATCGTAGTGGCATTGAAGGTGCGA
TACAGAGTAAGAGCGGAAACATAACAAAACTTAAATATCTCGAAATTTCTTACAATAACC
TCATCTCCACTATACCAAATTGGCTCTATGGATGCAAAGATCTAGAATCACTTGTCCTTG
GTGGAAATCATCTTGAGGGAACAGTTTCAAGTCTGATTTCAAATTTGAGCTCAATAATTA
ATATTGACCTTTCTAATAATATGCTTTCTGGAAAGTTACCAAATGTAATTGGAAAGTTAG
GGAAATTAGGATCGCTTGACTTCTCAGGAAATCTGTTTGAGGGAGATATATCTGAATTAT
TCAATGTTAGGAGTAATTTCCTTTCAGTGGGATTGCGAAATACTTCTTCTTTATATACTT
TGAGACTAGGCTGGAATAAACTCACAGGAGCTCTTCCGAAAAGTGTGGGCCAATTTTCAA
TGCTAGAATACATTTCCATCTCTAACAATAGGTTGGAAGGTGTTGTAACAGAAAGTCATT
TCTCTAAATTAACACATTTACAATCCTTCTCTGCATCTAGAAATAATCTGACTTTAAAAG
TGAGTCGGACTTGGATTCCACCTTTTCAAGCCTTTGAAATTGAAATAGGCAGCTGGAATA
TAGGCCTTTCGTTTCCCATGTGGCTCCAAACTCAGAACCAGATAATCTATGTCGACATAT
CAGATTGTGGAATACAAGGTGAGGTTCCAACTTGGTTCTGGAACTTGTCTTCTCAAATTC
GATTACTCAATCTTTCTCATAACCACTTTGTTGGTGAGGTTCCATTCATCTCGACAGATA
ATGAGCAGAGTGATTATCCGCCATTAATAAACTTGTCTTCCAACAATTTTAGTGGACCAA
TACCATTGATTTCAACCAATGTAAGAGAGCTAGATCTCTCCAACAATTCTTTTTCCAAAG
GTTTATCTAACTTTTTATGTGAAGCAAAGAATGGATCTTACAAATTGAGAATCTTAAACC
TCGGGGGAAATGATTTATCAGAAGAGATTCCTGATTGTTGGATGAATTGGCCTGAGTTGA
AAGTTTTAATCTTGAGGGACAATAATTTGATTGGAAGCTTACCAAGATCTATGGAGGTTT
TGAGTAATTTGCTATCATTAGACTTGCGAAGAAATAGACTTAACGGTCCGTTTCCTTCAT
CCTTGGAAAACTGCACAAAACTGTATAAAATAGATTTAGCTGAGAATGAGTTTATCGGAA
AATTACCATCTTGGTTGGGAATGAAGTTTCCAACCTTGATAGTCCTTATCCTTCGGTCCA
ATAAATTCAATGGTGAATTGCCTCAAGAACTTTGTCACCTCAAAGATCTTCAGATTTTAG
ACCTTGCAAACAATACATTTGTTGGAATCATACCAAGGTGTATTGGCAATTTGAGTGCGA
TGGTCAAAGTACTAGAAGATGATTTCGAGTTAAATTATTCCTCTTATTTTGGAACTTTGA
TAGAGAGTGCAATAGTGACGACTAAAGGAAACATGTACCAGTATGACACAATTTTGGCGT
TGTTTACAAGTATGGATATGTCTAGCAATAATCTTTCTGGAGATATTCCTATAAGTGTAA
CACGTCTTGCAGGATTAAGATCATTTAATCTTTCCAAAAATAACCTAACTGGTAAGATTC
CAAATGACATTGGTGACATGAAAGTCTTGGAATCTGTTGATCTTTCAGAAAATCAACTTT
ATGGTCAAATCCCACAAAGCTTTTCGAGTTTGACCACTTTGGGCTACTTGAATCTATCAG
ATAACAATTTGTCAGGTATGATACCATTGAGCACTCAACTTCAAAGCTTCAATTCCACGA
GTTTTCAAGGAAACAAACTCTGCGGAGTTCCACTCTTGGTGAACTGCAGTTCAGATGACA
ATATTCCAAATCACGAATATGAAGTTGATGAGAGTGACAAAGATGAAGTGGATTGGTTTT
ACATTTCAATGTCTATTGGATTCGCACTAAGCTTTTGGGGTGTTTGTGGTTCATTGCTTT
TCAAGAGATCATGGAGACATGCTTATTTTCGTTTTCTAGATCGTAGCTGGGAAATGTTAC
TTCCAAAGTTACCACTATGTTGAGAGATATGACTTAGGATATTTCTATCATCAAAAGTTA
GTGTGTCAGTGTGCTTACATTTCTCATGTTAGCAGTCATGTTGTTTCATTTTGTATTCAA
ATATGTAGACTTTTATGTTTTAATAACTTCCTCAAATGAATGTTTCTTAAGATGTTCAAA
CAATGTTGTTTCTTTC
