Microarray Probes on PGSC0003DMT400037717
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11063_PI426222305 |
JHI_St_60k_v1 |
CATGTGAGTCCTGTTTTGAATATTCCACAAGCTTTGTTTGGTTTAGGTTCATTGTTTTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400037717
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400037717 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G67050.1 |
+2 |
5e-18 |
82 |
104/318 (33%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). | chr1:25028862-25029656 REVERSE LENGTH=264 |
Transcript Sequence (1045 bp)
>PGSC0003DMT400037717 1045 pgsc_dm_v3.4
CCTCGCCCCCTACCCCTCACCCCAACCCCCAAACATCTTCTTCTTTTTACAACACATCTT
TTCTTCTTATAAATTAAACTTCACCCTCTTTCTTCAACTGTTGAAATCAACACCATAACT
CAAAACAAAAATCAAGAATCATTTAAAAAATAGCCACTTCATGGCTGTTGATGTATGTTG
TGAGATTGCAAGTTTAGTTGTTAGTCCAAGAATCTCCTTCTCTCATGATGATGGAATTCC
ACTTGAATGCCATCAACAACAACAACATCATTATAGATCAGATGCATTTCTTCTTGAATC
ATCATCCACCATTGATTTTGATTTTGATTTTTGTGTTAGTGAAAAACAACTATTCATCTC
TTCTGCTGATGAACTTTTCTCCAATGGCAAGATCCTCCCTTTTGAAATCAAGAAATCAAC
ACCCTTAGTAGAAATCAACCAATCTTTGCAAAAACAGCCAAAATCTTTGCAATTGCAAAA
ACAGCCACAAAAATCACTTCTTGAAAATGGTAAGGAAAATACAAAGAAAAAAAGCTTAAA
GGAATTCTTATCAACTGATCTTGACGATGATGAAGAACAAGAAACAGAAAAATTGCCACA
ACCAAAACCATTTTGGCAATTCAGAAGAAGTAGTAGTTTGAATTACCAAAATAGCCACAT
TTTGCAATTTCTAACCAGAAGTAACTCAACTGGCTCTGCTCCAATACAAAAGAATCCAAA
AATATTTCAAAAACAAAGTTCACAAAGAGAACAAAGAGAAAAAATAAAAGTTCTTAGAAA
GAGTTCATCTTTATCATCATCATCATCTTCATCATCTTCTTCTTCATTTTCGACGAATTT
TTCGTCGTTTAATCAGAGCCATCCATTGCATTCATCATCATCAAAGAAGAGTCAATCACA
TCCATTGAAGAAGAGTTATAGTAGATCTTATGGCAATGGAGTTCATGTGAGTCCTGTTTT
GAATATTCCACAAGCTTTGTTTGGTTTAGGTTCATTGTTTTGTAATGGCAAATCAAAAAA
GAAGAAATAATTTATTTATTTTTTG
