Microarray Probes on PGSC0003DMT400031854
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_10782_PI426222305 |
JHI_St_60k_v1 |
GGCAATTCATCAGCAGACTATGTTATTTTTGGTTTTGCTTGTTTGGCAATTTATAGATGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400031854
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400031854 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G76980.1 |
+2 |
8e-17 |
80 |
71/185 (38%) |
BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:28926466-28927242 REVERSE LENGTH=258 |
Transcript Sequence (1241 bp)
>PGSC0003DMT400031854 1241 pgsc_dm_v3.4
CCCTCTCTCACCCCCAACCACCTTAAAATCCTCTCAATTTCCAAACATGTTTGCTCCAAG
AAACCAAAAACCCAATGATCATATACACATTCTTGATCCAGTTACAACCTCAGATTACAC
ATATAACAACAACAATTATGCCATCCAAAAAAATAGGCCTAAAAATGATCTTGGAGGCCT
AGAAATGTCACAACCACATGTTGATTATGTTGATGATTCTGGTATTTCTTCACCACCCTT
ATGGAAAAATAGCTCAACAAGAAGCCCTGATCACCCCTTTCATAATTCGACGAATCATCG
ATCAATTTCACCTAGCTCTAGAGCTATAGCTATAGCCAAAGGCCAATGGGAACTAATGGA
AATGATCAAGAACATGCCTGAATCATGTTATGAGTTGTCACTTAAGGATCTAGTTGAAAA
AAATTCAATCTTGGAAACAAATCAAGAAGAATGTTTGATCAATAAAGAAGAGGAAAATTT
TAGTACTAGTCAAGAACAAGTTGTGGTGCAAAGGGTGAAAAGTGTAAAAAGACAAGAAAG
TGGTAAAAACAAGAAGGGGAAAATGATTAGAAATGAAAGTTTTGAAGAAAAGGGGTTTTT
TTTAAAGATGTTTTTTCCAATTCCACCAAAAACAATTAGTACTAAAGTTTCACCTAAGCC
AGTTGAAGGTTTAAAAAGTTTGGAGAAAGATTGGTGGAAGAAGAGATTTTCTTGTTCAAG
TGAGAGTGATAGTAGCAAAACAGGAAGTAGTAGTAGTGAAAGCAGTGGCAGTAATGATAG
CAGAACAAATACTAACAGGAAAAAGAAAGGATTTTTAACCAATTTCTGGTCAAGATCATG
CTTTAGTAAAAGAAAATTAGCAGAGTGAAGACAATAAAATATTGCCAATCTTGTTTAGTT
ATGAATCCTGTAAATCTTTTATACTTACAAGACTTACAGATGAAAAAAAAATATCCTGTA
AAGATCTTTGATAAATAAAAGATCAATCAGAGGTGATGCTTGAGTTTTGTTGCAATAGTC
ATTTTAAGTTTCTTAGAGTTGTTTCCCTTGAAAAGGAAGCAGTTACGTCCATATGTCTTC
TCTTATTCCCGACATGTTATGGTAGCCTGAAATTGGTACGAGCAGGTCATGTTTGTCACG
CAGAACAGTAGTTCTGTTTGAATCTGATCTATTTACTCGGCAATTCATCAGCAGACTATG
TTATTTTTGGTTTTGCTTGTTTGGCAATTTATAGATGGATA
