Microarray Probes on PGSC0003DMT400031787
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_10870_PI426222305 |
JHI_St_60k_v1 |
GTGTTGAAGTTAATCGAGGTGTGCGTAAACTGATTTGAGATGAAGAAAATATCTCAAAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400031787
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400031787 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G75060.1 |
+1 |
7e-49 |
171 |
106/199 (53%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28181481-28183285 REVERSE LENGTH=242 |
Transcript Sequence (1534 bp)
>PGSC0003DMT400031787 1534 pgsc_dm_v3.4
TGATAATCGCTTTTTCAGGATTTTCGTTAGCTTGATTGATTCTGGTTCTTGAAACTTAGA
AAATTTTTAGTCTCGATTGTGAGGTGAATCGCGTTCTTAGGACTGGAGATTCTATAGAAA
GGTATCTGAATTGAGATTCTTGGGGTTTAGTTCTGTACTGGAAGTTGAAGTTTTATCTGC
TACCAAGTTTGCTGTTATTGGGGATTTGTTATTTCATTGTCTGATCATGATGAGGACGAG
CAAGGGAGAAAGAATTAGTCACTATATAGAATTCCGTAGTTTGGTTCCAGAGTATCAGTA
GCTGATTCAATTCTGATTTCCGTTGCTATCTTCATTGGGGTCACTGATTAGTTAGTTGTT
GAGACGAGCAAAATGCTGGAGACTCAGTTATGTCCTACTCGGGTGTTATCACCTTTCCGT
GAAGAGAGTGGAGATGAGGAGTTGTCTGTACTTCCGAGGCATACCAAAGTTATTGTGACG
GGAAACAACAGAACCAAGAGTGTTTTGCTGGGGCTTCAGGGAGTTGTCAAGAAGGCTGTT
GGGCTTGGTGGTTGGCATTGGCTGGTCCTGAAAAATGGGGTTGAAGTCAAGCTACAAAGA
AATGCATTGAGTGTGCTAGAGCCTCCCACGGGGGATGAAGATGAGGACGATTATGACTTT
GATGACTCGACCAGTGGTTCAGAACTTGGTGAAAAAGAAAACCATCACTTTGCTACTGGT
GTCGTATACAGAAAAGTGAGCAAGCCTAGAGTTCGATATACAAGGCCATGGGCCTTATCT
GGACCACCAAAGACAATGAACCGTGGCAATTGCAGAGACGTTGAAACTAACTATTTGCAA
CCGAGGTTGAACTTGGCAAAACTCGGAACTGGTTCATTATGGAGGTACTGGCGAAACTTC
AACCTTGCACATATTAGCCCTAACCCGACAAAAGAACAACTGCTTAGCGCTGTTCAGCAA
CACTTTTCGTCACAGGTCTGGTTCATTTTCGTGCTATGCTTAACTACATAAATCTTACTC
ATCCCCATCTTACCCTAACATCATCCTTACGATCTTAATCTTTTCAGCGAGTTGACGAGG
TACAAGTGGTGATGGAATTTATCCGCGCAGCCAAGAAACTAAGATCAACTGACACACATT
GAGATTTATCGATGACGATGATAGGGAGGGAAATTTGTGAAGGAAGGTTGGATTATTATC
TGTAATATAATGCAATGCATATATAGAGTAAATATTTATGAACCTCTAACTTAGTTCAGC
TAATTATAGAACTCTACTAATAGAGACTGGTGGGAGCTTCTTTGTTAGCTTACTCCCCCA
AAATTGTCTCCCGGATCCCTAACCTTGTATGATCCGGCCCCGACCTGGACCCTGACCCCG
TTAAATATAAACTTCATTTCTAGTGTGAATTTTGTGTTGAAGTTAATCGAGGTGTGCGTA
AACTGATTTGAGATGAAGAAAATATCTCAAAACATCATTGTTGTTTTTATTATCATATGA
TTAAATATGTGGATATGGAAGCCAGGCTGTAAAT
