Microarray Probes on PGSC0003DMT400031458
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2626_PI426222305 |
JHI_St_60k_v1 |
GTTCCTTGTCCATACAATACAATACGGTACAACGGGTAACACTTTTTTGCTTATTGTATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400031458
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400031458 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G47010.1 |
+1 |
0.0 |
539 |
245/406 (60%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493 |
Transcript Sequence (2749 bp)
>PGSC0003DMT400031458 2749 pgsc_dm_v3.4
TGATTCAAGCATGTTGATGTCGATTCATATGGTATTAAAGAACTCCTAATCATGATGTTG
TCGTGGTGGAGAATGGTAATATTAACATGTGTAAATATCATACGAGTCTGCAATTGATTG
AAAAAGATATTGGAAAGACAAAATACCCATTAAAAAAGATGTTGGAAGGAAAAATCTTGA
ATTTGTAGTCTACTCTGGAAAGATTTATTCAGCACAACACCATGAACTTGTATGAGGTTG
ATGTTGATGTTGTGTTATGTTATGAAGTTGGTTCTTGGTTTACTAGTTTGATAGCATGAA
TGATACATAAGTTGATACGAAAGTTGGTTTACTTATATTTTCTGATTTAGTAGTTTATAC
ATAATAGATAGAGTTGAGGGGCTTTTGGAGTTGACACTGAACACATAGTATTTCTTTACT
ATCAAGACTACAACAATTGACTTAACTGAATCCTGATCTTTAACAGTTTGTTTGTTGCAC
CCTGAGAGCTACAACTGTGAGTTTCTTCATCATTGTGTTTCGAGTTACTGTGGGAATTTC
CAAAACTTGTCAAGGTTACTACTGAGTTGGCTGAAAGATTGGTGAATTTATGGGTTATTC
TAGCTTGATGTGTCTAGAGCTAGATGGAGAAGGAGGAAATAAAATTTTAACCATTGGATC
TGTAATTTATAGGAAGATGGAAAATTTATTCCTGCGCATCTGACTAAAAGACTGCAGGAG
CCATGAGGAGTGATCCAGTGCCACAAATTATGGAGGAAATACTATTCAATAATTGAATTT
CTCTGTTGTGGTGGCATTTTGTAGTAAAACAGATTTTGATACTATTTAACCAAATTGGGA
TGAGCATTTTGCTGGAATTTCAATTGTCATACATCAGACTGATCAAAAAGAAGTTGTGAC
TCATCAGAGTTCAAGAAGCTTTCATACTTCTCTAAGCTGTTACTAATTGGCATAAGTCAT
AACTCCATCGTTGCCGTCAGTTGACTGCCATTGTGGTTGAAAGGAACCTGAACCTGATTT
TGTTTCCCTTGTCCACTAACCATCATTATGACTACGTTCAACATTAACTGTCTAATTTTC
CTTTGAAGCTCTATCCTTCTCTGATCCTTTTCTTTTCCCTTTTCTAAATGTAGTTGTTTT
GTTATACAATTTGATTCCCAAGGTGATGAAAAAGCAGAAAGAATTGATAGGATATTGTTT
GAATTTTGATGAACTCAATTACATGAATCATAGACATAATGCCTTGAGTAAATGCTAGCA
TTGAACAACTTTATGATCTGCCCACCTCTTATTGGTTTACTTTTATGGTGAGGTCACCAA
GATATTCCGGGAGGTCCGCTTCTTCGAAAACGGAGCACTTGTAAAGTACACCACAAAGTG
ACGGAAGTAGACAATAGATTAGGAGTTGGAGATAAAATTCCAGATGGGAGCCATAATGCT
GACATGAATCCTGATCTTTATGCTGTGGAAAAGGAGTGTTACCTTGGTTCACTTTGTGAA
GTGCATGATTCTGGTGACCCATGGTATTATTGGATGATAATGCTTAAAAATGGAAATTTT
GACAAGACGACTACTCTTTGTCCTGAAAATGGTAGGAAAGTTTCTAAGATAGTGACTGGT
AGAACTTTTCCATGTTTTGGTGAGGGCTGCATGAATCAGCCACTTGTCTACCATAACTAC
TCAAGGATAGTCGATGGGGAGCATTCATCCTTGATCGGAGGCTTCTATGGAACATATGAC
CTTGATGCCAATTTAACTGCCGGTGTAGATGGGAAATCTTTTTTTTCAGTTTCATGGCGG
AAGAATTTAAGCACAGGTAGTTGGATTATCTCAAATAAATTGACGACATCATCCAAGTAT
CCATGGCTTATGTTGTATCTAAGATCAGATGCAGCAAAAGGGTTTAATGGAGGATATCAC
TACAGTGGCCGTGGAATTATGAAAAAGCTTCCGGAGTCACCAAATTTCAAGGTGAAGTTG
ACACTTGAAGTTATACAAGGAGGAGGCTCGAATAGCCAGTTTTATCTTCTCGACATAGGA
AGCTGCTGGAAAAATAGTGGAGAGCCATGTGATGGAGATGTTTTAACAGATGTGACCAGA
TACAGTGAGATGATCATCAATCCAGCAACGACAAGTTGGTGTCGTCCTGATAACCTCGTG
TCCTGTCCACCCTACCACATTAGCCCTAATGGGGAGATAATATACAGAAATGATACTTCT
CGGTTCCCATACTCTGCTTATCATCTATATTGTGCTCCTGGAAATGCAAACTATTTAGAG
AAACCATATGATATCTGTGATCCATACAGCAATCCACAAGCTCAAGAACTGATACAAATC
CTGCCACATCCTGAGTGGGCTGTGCATGGTTATCCTTCAAAACATGGAGAGGGGTGGATT
GGTGATACTAGGAGTTGGGAGCTTGATGTAGGAGCATTATCTAATCGGTTATACTTTTAC
CAGGATCCAGGAACCAAACCAGCAAAGCGTGTGTGGTCTTCACTTAATGTTGGTACGGAA
ATATATGTTAGCAGCCAAGGGGCTACTGCTGAATGGACTGTCAGTGATTTCGATGTATTC
ATTCCTGAAGAATATGAAGGTGATGTTAGGGCAGTTCTGTAACACCTGTTGTATGTTCCT
TGTCCATACAATACAATACGGTACAACGGGTAACACTTTTTTGCTTATTGTATATATAGA
CACACATTTTAAATTTTAATAAGATTGTTTAGTTTATTTTTCTATCGAG
