Microarray Probes on PGSC0003DMT400030796
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_43660_PI426222305 |
JHI_St_60k_v1 |
ATGGTTTCAGCTAGAGGCTCTCATGTGACTAATCCTGGTATTGAGTCCGATGACGATGAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400030796
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400030796 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G01015.1 |
+3 |
1e-20 |
86 |
36/70 (51%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5335-5769 REVERSE LENGTH=104 |
Transcript Sequence (957 bp)
>PGSC0003DMT400030796 957 pgsc_dm_v3.4
AGTTGGTATCTAAAACCCCAATTTTAATTTATTCTCTAGGAATCAATAAAAGTGTTTAAA
TTTGTTCTATTTGTGATGGAGAATTTTCCAACTGTCATAGATGTAGATGGAGAATGGAGT
TCAATCAAAGTTAGAATATATTCCTTGATCAACCACTTTACCAATAAGCCTCTTTATTGG
TCTTACAACTCGAAATTTTTTAGGAACAATTGACACATAACAATCTGTTTGCATACAGAT
ACAAGTTACAAGTACTACTCTTATCTTCCTACGCGACACTAGTTTGGTTCGCGGTTGATG
TGGTTGCTCCCCTACTCATATTGTCGGGAATCATGCAGAAATCGTTCGCTCAAAATCTTG
TAAAACTATCATCACTGCCAGTAATTCTTGTTCTCCTCTTCTATTGTTTGGATATGATGG
TTTCAGCTAGAGGCTCTCATGTGACTAATCCTGGTATTGAGTCCGATGACGATGATTTGA
AGCAAGATGAGACATCATTGACAGTATCCACGAGGAAACGATTAGAGCCCCTGCATCGCG
ATACAGAATACAGACTAGTAACAGCATCTCAGGAGCTGGAAATGGAATTAGCAGCTAATA
ATTATAATAAGTCTAATAAGACATGGTTATGGTCGCGACAACAGCAGCCTTTTCAGCTAT
GTCTGGCTTGCAAGTGTTGTGTGTCCGCGGTGGAGACAGAGGCAGAGGCAGAGGCAGAGC
CCAGCAACTGTACAAGCTTGCCTTGTTGCTTTGTTATAGACTGCCAACTCCCTAATAAGC
CTTACGGAGTTTGTGCTTTTGTACCTAAGACTTGTAATTGTACCTCTTGTGCTACTCCTC
TGCTCTAAGCCTTAACCAGACGTATTCAGTATTTGAAATTTATGATTTTCTTCAACGATC
TCAAGTTAATACTATGATTATGATTGGATTCAGTGTCAAATATTTATAATATTTTGT
