Microarray Probes on PGSC0003DMT400028799
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2391_PI426222305 |
JHI_St_60k_v1 |
AGAAGAAAAATGGCTTTATCCATGAAACACTCTTCCATTGTTCTTTTCTTTGCTTCCACC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028799
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028799 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g085010.1 |
+1 |
4e-113 |
328 |
177/188 (94%) |
evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch10 gene_region:63675641-63676631 transcript_region:SL2.50ch10:63675641..63676631- functional_description:PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 |
| TAIR PP10 |
AT3G54040.1 |
+1 |
3e-54 |
177 |
87/155 (56%) |
PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183 |
Transcript Sequence (911 bp)
>PGSC0003DMT400028799 911 pgsc_dm_v3.4
CATATTACAAAACACAATTACTAATTAAACTTCATTTCTTCTTACAACATTTCTCAATTA
CAACATAAATCCTTGCAAAAACACATTCTTAATAACCAAAAAAACAAAGAAAGAAGAAAA
ATGGCTTTATCCATGAAACACTCTTCCATTGTTCTTTTCTTTGCTTCCACCCTTTTCCTC
CAAGTCGCATTAGGGGAAATCACATGTGAAAACTTGCCAATAAATATTTGTTCATTTTCA
ATCTCATCATCCGGAAAGAGATGTTTATTAGAGAATTCAGCAAATGAAGATGGAAAATTG
GAATATCAATGCAAGACATCAGAAGTTATTGTTGCAAACATAGCAGAGTATATTGAAACA
GATGAATGTATTAACTCATGTGGTGTTGACAGAAACTCTGTTGGCATTTCTTCTGATTCT
TTACTTGAACCTCAATTTACTGCAAAACTCTGTTCCCCTTCTTGTTATCGCAATTGCCCC
AACGTTGTTGATCTTTACTTCAACTTGGCTGCTGGAGAAGGAGTATATTTGCCAGATTTG
TGCAGCAAACAGAGGAGCAGCCCACACCGCGCAATGATTGAGTTATTGAGCAGTGGAGCT
GCTGCTACTGATGCTTCTGCCCCTATTGCTTCTGAAGATATTATTGTTGGTGCTCCTGAT
ATTTCCCCTGCTTCTTTCTAATTTATGTATATTATGTATACTATATTCTAAAAATTATTT
TCCTTGGGAATTTGTTTATGAAAAGGGAGAGGAGAATTTGTTCTTATATTATTAAGATTG
TAGTATAGTAAGAAATGGGATTTTGATCCCATTGTTGATTTATTTTTACATAGGATTTAT
ACGAAATTGTTCTTGTGAGAGAATCTGTTTACCAGTTTTTCTTCTGCTGAGACTTTAATA
AAATGTTTTTC
