Microarray Probes on PGSC0003DMT400028768
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2065_PI426222305 |
JHI_St_60k_v1 |
TTGCAAGTGTGAGAATCGACAATGGAGCGAATCGTGATTTGTTGTTCTTGAAACAAAAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028768
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028768 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084880.2 |
+2 |
0.0 |
858 |
443/472 (94%) |
genomic_reference:SL2.50ch10 gene_region:63580319-63582004 transcript_region:SL2.50ch10:63580319..63582004- functional_description:Avr9/Cf-9 rapidly elicited protein 137 (AHRD V1 ***- Q9FQZ2_TOBAC); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 |
| TAIR PP10 |
AT3G23160.1 |
+2 |
2e-81 |
267 |
180/482 (37%) |
Protein of unknown function (DUF668) | chr3:8260059-8261654 REVERSE LENGTH=531 |
Transcript Sequence (1648 bp)
>PGSC0003DMT400028768 1648 pgsc_dm_v3.4
CTTGCAGCTTCCACCATTTTTTTTATCAATACACAAAAAAAACTCGAAAAAAAAACACAA
AAAATTGCTGCTATAACATATTAACATACCCTTTATCTATTTATCTATCTATCTATTTCT
ACCAATCTATCTTTCAATGGTTGGTTTCGCGAAAATGGGTTGGCGCAGTTCAGATAACAA
TAAGAGCTCAAAAACAGGAGATGATATCAACAAAATGGGGATTTTATCATTTGAGACGGC
GAAAATCATGTCAAGATTGCTCTGTTTATACAAATCTCTATCCGAGTCTGATATTTCAAA
TCTCAAAACAGAGATGAAGTCAGGTGGGGTATCGTATTTGAATTCGAAAGACGAAGGATT
TCTGTTAAGCCTCGCGTGTGCTGAGAGGCTTGAAGATCTTGATAAAGCCGCAGCAGCTGT
AGCTAGATTAGGCCATAAATGCTCTGATTTTGGCCTAAATCGATTTGATCTTGCGTATAC
GGATTTGAAGTTGGGGATTATTGATTTTAGGAAATTGGGATACGGATCGAAAGATATTGA
GAAACGAGTTTTTAAAATGGAGAAATTGATTAATGCTACATCTGGATTGTACGCGGCGTT
GGAGAATTTAGCGGAATTGGAAGTATCAGAACGGAAAATGAAACAATGGAAGGAACGAAA
AGCATCAGGGCAATTGCAGAAAGTGAATTTGGATATGTTTAATCAGAAAATTGAACAACA
GAGGAAACAAGTTCGTCAATTTAGAGAAAATTCTTTATGGAATCAAACATTTGATAAAAG
CGTTGGTCACATGGCGCGAATCGTCTGCATAATATATGCTCGTATTTGCGTTGTGTTTGG
ACCTCACATACCCATTCTTCCTTCACTATCGTTGCGTAATATGCGTTCATCTCAGCAGAA
AGAGATTCTCAAATTCCAGCCTGAAAATTGTCTGATTGAACCAATTAGGGAACAGATCAT
TTCGCGGTCTGGACCAATCCCCACGACGTCTAAGCAAACTCTGGTTCGATTTTACAGCAG
AAAATCGATATTTTTCCTATGTGAAGACGAAGGTTTTGGGGCGGATAAGTTGGCGAAAAA
CAACAGGGTGTTTCACGCAGCAGGGCCTTTAACTGTAGGAGGTGCAGGGCTAGCGTTGTG
TTATGCTAATGTGATCACATTAGTAGAGAAGTATTCGAATCCATCTGAATCCGTAGACCT
TAATTCACGAGAAAATTTGTACCAAATGTTGCCAGGGAACCTGAAGAAAACAGTGAGATC
GAAATTGAGCAAGAATTTGAAGTGTATGGATGAGGACGAGTCGTTGGCTGAGGGGTGGAG
GGATGCATTGAAGCAAATTATGGAATGGTTAGCGCCAATGGCTCATAACACTATCAATTG
GCAGCTTGAAAGGAATTTAGAGAAGACAAAGTTCGATATCAAGCCTTCTGTTTTGTTGCT
GCAAACATTGCATTATTCGGATAAAGAAAAGACGGAAGCTGCCATTGCTGATATTTTAGT
CGGATTGAGTTGCATTTGCAAGTGTGAGAATCGACAATGGAGCGAATCGTGATTTGTTGT
TCTTGAAACAAAAAAAAAAACTGTTGAAATTTTTTATGTAGTTAGAACATGTCACATATT
AGCTAGGATTCATTGGATTGTGGAAAAG
