Microarray Probes on PGSC0003DMT400028619
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2203_PI426222305 |
JHI_St_60k_v1 |
TATTTATCTAGCCAGCTTTCTAGGAATAAGACTTGTACACAAAGTCCATAGCAATCCGCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028619
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028619 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084960.1 |
+1 |
2e-136 |
391 |
202/222 (91%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63636357-63637715 transcript_region:SL2.50ch10:63636357..63637715+ functional_description:Glutathione S-transferase-like protein (AHRD V1 ***- A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal |
| TAIR PP10 |
AT3G09270.1 |
+1 |
5e-66 |
211 |
109/210 (52%) |
glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224 |
Transcript Sequence (1049 bp)
>PGSC0003DMT400028619 1049 pgsc_dm_v3.4
CACAAAGTCCATAGCAATCCGCTCCCATTTTCGCACCGAGCTATAAAAGAACATCAAAGA
ATCAATAACACAAGCATAACAAAATCTTCAACACAACTAGAAGTTTATTATAAAAATATG
TCAGGAGTGAAATTGCTTGGTGTTAATGGGAGTCCAGCTAGTCAAAGAGTTGAATGGGCT
TTAAAGATAAAAGGGGTAAAATATGAATTTATAACAGAAGATTTACAAAATAAAAGCCCT
TTACTTCTTAAATCCAATCCAGTTTATAAGAAAATCCCAGTTTTGTTACATAATGAGAAT
CCCATTTCTGAATCACTTGTTATAATTGAGTATATTGATGAAGCCTTTGAAGGACCATCT
ATATTGCCTAAAGATCCTTATGACAAAGCTATCGCTCGTTTTTGGGCTAAGTTCCTCGAT
GATAAGTGCTTACCAGCGGTGTGGAAAGCTTTGTGGAGCCAAGGAGAGGAGCAAGAGAAA
GATAAAGAGGAAGCTTATGAGGTCCTTAAAGTTCTTGATAATGAACTTAAGGACAAGAAG
TTTTTCGGGGGAGACAATATCGGATTTGTTGACATAGTAGCCAATTTTGTCGGATTTTGG
ATAGAAATTGTTGAAGAAGCCACTGGGGTTGTACTCGTGACTAGTGAAAAATTTCCTAAT
TTTTGTGTGTGGAGGGATGAGTACCTAAATTGCGACAAAGTAAAGGAAAATATGCCGTCC
AGAGAAATGTTGCTTGGTTTTTTTAAGTCTCGGGTTCAAGCTGCTGCGGCTACTCTCAAA
TGAATATCTAAATCCAATTTCCTATGGGTTTAGTTTTACATACTTGTAGTGGTTTTTTTG
TGCTATACTTGAATCAAGAGTGTATCAAAAATAATCTTTTTATCTTTTGAAGGTCTCCGT
AAAGCTGCATACACATTAGTACCCTCTCCAAATCCTATTTGTGAAATTACATTAAATATG
TTATTATTATTTATGTTTTCTTTTTGGGAATAAAAGATGTCATTTAGAGAAATATTTATC
TAGCCAGCTTTCTAGGAATAAGACTTGTA
