Microarray Probes on PGSC0003DMT400028525
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2390_PI426222305 |
JHI_St_60k_v1 |
ATCACTTGGGTGGAAGAGAATGGGCATCACACCGTAAGAAGTCCTATAGTAGTTGCTCTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028525
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028525 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084320.1 |
+1 |
2e-110 |
336 |
166/195 (85%) |
evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch10 gene_region:63240593-63242908 transcript_region:SL2.50ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related |
| TAIR PP10 |
AT5G51750.1 |
+1 |
4e-33 |
126 |
73/193 (38%) |
subtilase 1.3 | chr5:21020266-21022608 FORWARD LENGTH=780 |
Transcript Sequence (597 bp)
>PGSC0003DMT400028525 597 pgsc_dm_v3.4
ATGATGACCACTGCCAACCCTTTGGATAATACTGACAAACCCATCAAGACCACGGATTAC
TTCATTACAAGGGATGCTACATCATTAGACATGGGAGCTGGACTCGTAGATCCAAACCGT
GCAGTTGATCCAGGCCTGATATATGATGCAACTCCACAAGACTATGTGAATCTTCTCTGC
TCCATGAATCTCACAGAAAAGCAATTCAAAACAATTGCTAGATCATCAGCTAAGCACAAC
TGCTCAAATCCGTTCGATGATATGAATTACCCATCATTTATTGCTCTCTTTAACCCAAAT
GAGGACTACACTTGGTTGGGGCAGAAATTCAGGAGGACAGTCACAAATGTTGGACCTGGT
GCTGCTAATTACAAAGCAAAAGTGACAGCACCAAAAAACTCGACAATTTCTATCTCTCCA
CAAACCTTGGTGTTTGAGAAGAAAAATCAGAAGCAGGACTACACTCTTACCATACGTTAC
AAAGGCATTGCAGACGACCAAGCACAATCTGGTTCCATCACTTGGGTGGAAGAGAATGGG
CATCACACCGTAAGAAGTCCTATAGTAGTTGCTCTAGCGCTCGATGCCTGGACCTGA
