Microarray Probes on PGSC0003DMT400027123
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2303_PI426222305 |
JHI_St_60k_v1 |
TTTTATCCGTGTAGAGGAGCTTTGAAAAAGCAGAGTTGTTGGAGAAAAATGAGAATAAAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400027123
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400027123 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084170.1 |
+2 |
3e-86 |
261 |
155/174 (89%) |
evidence_code:10F1H0E1IEG genomic_reference:SL2.50ch10 gene_region:63156711-63157223 transcript_region:SL2.50ch10:63156711..63157223+ go_terms:GO:0006915 functional_description:Bcl-2-associated athanogene-like protein (AHRD V1 ***- D1MIX4_VITVI); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region |
| TAIR PP10 |
AT1G12060.1 |
+2 |
2e-15 |
74 |
55/134 (41%) |
BCL-2-associated athanogene 5 | chr1:4076334-4076981 FORWARD LENGTH=215 |
Transcript Sequence (1006 bp)
>PGSC0003DMT400027123 1006 pgsc_dm_v3.4
CTAAGATGCCTTCCAGAAGATGTTTCGAAACTTCTGGAATATTCAAATCTCATTCTGGAA
AATTCAGCTTCTACCTCAAATAGCAGAAAATCTAACCGCTTGTCTCATTGAATTTTACAA
TACAAAATCGTTAGCTATCAAATATTCAAATAATATCTCAACAAACCGATCAAAGTTAAC
AATGGAAAATCTTTTCAATTGGTCTCAGCAAGATCGCCCTCGCTATTCCTCGAGAGGAAA
ACCAGTACAATCGGTCCATCAGAAATCTGCCGGAATCAAGCCGGCGACGAAGGTTGTTCA
GATTCCGGTCCACTCCGTCAGTTCGGATCCAGATCGGTCCTCCCCGACACAGAAATCTGA
TGAGGTGGCGCAGGCGCCTGATAGAAGATCCGCTTCAGCGTTAAGGATCCAGAAGGTATT
TCGAGGTTATATGGTGAGGAAAAACGTGAAGAGAATTATGTCAATACGAAAAGAGGTGGA
TGAAATTGAGCGGAAGCTTTTATGCGGCGAAACGGCGGAGTTGATTCGGAGAGACGAAAG
GGAAAGGTTGCGGGTGAATGAAACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTAG
TGGAATTGATTCTGGTGTTAGGGAGTGCAGAAAGGGTGTGATTAAGAAGGCAATATCCTT
GCAAGAAAAAGTTGACTCCATTGTTCCCCGCAGCTAATTAAATTGCGAATAGAGTGTGCG
TAGATCTTACTCTTATCTCGTAGAGCAAGAGTGGGTGCAGAATACGAAAAATGATGAGAA
ACACCGATTAGAGGGCGAACAACATGTAGCTCCATTGGGCGGAGCCATAACCCCCTTTCG
TGGAAAATAATCTTGTTTAAATTTGTTTAAAATTATTTTATATGTATATACTATATGTAA
CTTTCTGCGGTTTCTTAGTATGTTTACTTCTTTTATCCGTGTAGAGGAGCTTTGAAAAAG
CAGAGTTGTTGGAGAAAAATGAGAATAAACAGTATTTTGACTGCAG
