Microarray Probes on PGSC0003DMT400026192
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_895_PI426222305 |
JHI_St_60k_v1 |
CACAACGCCTTCCTTGCAAACACTGAATAGTAATATTTGTATGGTACTTACCTCAAAATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026192
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400026192 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g089770.2 |
+3 |
0.0 |
657 |
322/344 (94%) |
genomic_reference:SL2.50ch02 gene_region:46055433-46058696 transcript_region:SL2.50ch02:46055433..46058696+ go_terms:GO:0004022,GO:0045551 functional_description:Dihydroflavonol-4-reductase (AHRD V1 ***- B6TK03_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain |
| TAIR PP10 |
AT5G14700.1 |
+3 |
6e-71 |
232 |
117/258 (45%) |
NAD(P)-binding Rossmann-fold superfamily protein | chr5:4740502-4743327 REVERSE LENGTH=368 |
Transcript Sequence (1371 bp)
>PGSC0003DMT400026192 1371 pgsc_dm_v3.4
TTTCATATTTACCATTTTATCTACTACTTAACTAATTTATTATCTTTTGGTACATATAGA
GCTTGTATAAGTGTATATAAGTAGGCCACTCTCTAACTATGTCAACCCAGCTAAGTGGCA
GATACCCTTAAGGCTCTGAAATTTCATAATTGAGCTGCAGAAAGAGAGAGATGGATGTCG
CGATATCCTTAGAATTGGAGCCACTAAAGCAGATGAATGATCATGGAATGTTCTTTTCTA
GTGGTAATTTTATCTGCAGTTTGAATGCAAGAGACAGGAAAATTGTTTGTGTCACCAGTG
GAAACTCCTACTTTGGTTCTCACTTGATCAAGAAGCTTTTGGCATATGGTTACCTTGTTC
GAGTTATTATTCAAAATCAAGCTAATCTTGAGGACATGAAGGAGCTGATGAGGGAAGAAG
TGAAGCAACTGGAGAGTGTTGTGGTGGCAAGAATGGATGATTTAGATAGCCTCTGCAATG
CTTTTAGAGGTTGTCATGTTGTTTTCCACACATCATCTTTCGTTGATCCGCGAGGGATCT
CTGGATACACGGAACGAATGGCATTTATTGAAGCTGAAGCAGCAAAGAATGTCATAGAAG
CTTGTGGCAGGGCAGCATATGTTAAAAGATGCATTTTCACCTCTTCTCTACTTGCATGCA
TCTGGAAAAATGACCTGCCAAACCTCATAGATGAGAGCTCTTGGAGTGATGAGACATTCT
GTAGAGAACACAAGCTTTGGCTAGCCTTGGCCAAGACCAGGGCAGAAAAGGTTGCTTGGA
GGAAAGCAAGGGAGATGAAGGTGAAACTTGTTACTTTATGTCCTGGACTTCTCATGGCAC
CATCTTTCCCAAACGCTCACCTTGAAACTTCTCTCCCGTACCTCAAAGGTGGCTATTTCA
TGCTAAGACAAGGAATTCTAGCAACTGAAGATGTAAGTAAAGTGGCAGAAGCACATATTT
ACGTCTATGAAGATATGGACTATGGAGCGTGTGGAAGATATATTTGCTTTGGAAATATAG
TTGGAACATTGGAAGAGGCCATACAACTTGAAAATGGCTTGAATATATCTGGCCACTTGT
CTGGGGATCAAAGCCCTCTTGCAGTAGCAGTTGAAAATAATGAAATTCCTCCCAGAATTA
CTAAGTCAAAGCTCAGTAGATTACTATTCCATGCGTCACAACGCCTTCCTTGCAAACACT
GAATAGTAATATTTGTATGGTACTTACCTCAAAATATTATTACAAAAAAGGTAGCAATTG
GAGAAGTGTAGTCAGGAATTTATATAAAGGTAATGTCATGATTGATAATCGAATTTGTGA
GCAGAAGTTATTTTTCAGCTCAATTTACCACAACACTATATTCAATAATTT
