Microarray Probes on PGSC0003DMT400024027
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_24942_PI426222305 |
JHI_St_60k_v1 |
ATTGCTGAACCTGTCTCAGAGTACACTTGTTATACCAGATAAACCTGATGAAATTTCATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400024027
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400024027 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G31940.1 |
+3 |
2e-55 |
179 |
91/148 (61%) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470293-11471154 REVERSE LENGTH=158 |
Transcript Sequence (808 bp)
>PGSC0003DMT400024027 808 pgsc_dm_v3.4
GACAAAACCATCAATGCAAGCTAACTTATCTCCCCCTTTTCTTGGTTTCTCTCACTATAT
TTCTAGAAAGAGAAGCTGAATTTTTGTGTCAAAAAATAAGATCAGAAGACACCCTTTTGG
GTGAATTTTTGTTCTGATTAAAGAGCCTTAATATGGTGGGAATTTTTTCTAGATTTTCTG
TCAGCAGAGCTGGCCATCGTCGAGCTCAAAGTGCACTTGATGAAGCAGAAGTGTTGCCCC
CAAATACAGAGACAATTGGTGCTGTTACTTTAGCTGGAGCTTCCTCTATCAACCCTCATG
GTATTGAAATTGCAGTTGAGTTCAAACCAGTTGAACACCCGACTGAGCCTCTACATAATG
ATCGGCCAATTCTATGTCCATTACCAGAACCTTCAATATTGAATGATGGGAGAATATGGA
AGGAGCGAGTGTCTGCAGTGCGAAGAAGGGCTGATATTCCTGTTGTGCAGGAAGGAACAA
CTGCAGGGTCTGAGGCTGCTGGAACAAAACCTAGACCATCGATGAATCGGGTTATTCTTC
CGTCAATCAGTGCACCTGAACACAGTATCCTCAAACTACTGGAGGAATCTGGAATCTAGC
TGATGCATTGCTGAACCTGTCTCAGAGTACACTTGTTATACCAGATAAACCTGATGAAAT
TTCATATTTTACTTCTTTCCAAGTTTCTCTTCTTGCTTCCAATGAAATGTTTGTAATTCA
ATTTTATAGGAAATTTCACACATTTGAGTGTAAATATTTCTTCTCATACTGATTGAAATA
TAGTTTCCAATTGCTCACCATGGTTTTC
