Microarray Probes on PGSC0003DMT400023953
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_21526_PI426222305 |
JHI_St_60k_v1 |
GGGTACTTGGTGTCCATAGTCACTCGAATTTATTTGTCTTTCAAATATCATTCAACTTTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400023953
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400023953 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G30260.1 |
+3 |
5e-12 |
63 |
28/39 (72%) |
BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10651159-10651452 FORWARD LENGTH=97 |
Transcript Sequence (1160 bp)
>PGSC0003DMT400023953 1160 pgsc_dm_v3.4
CTAATGGTGAATGGCATCCTATATATACTCTGGCTGTCCCAAAGGGAATATGTTGCGATA
AAAGGCATAGACGTACAGCGCAAGACGCCCAAATTTTAGGAATGATCCTTCAAGGCAGTC
TTCTTGACCCTCCATTCGACTGACTGTACAATATGAAATGCAGAAAAGGGGCATGTGGCA
TTCAGTTCCAGGTAAAGTTCTGAATTGAAAAAATTTTATGGCAACAAAACCCGGATATTT
AATTTATGTTGTTTTTTTCTACACATTGCATTCTGCGTCCCCCATATAGAAGGATATGTA
TGATCTCTTCAATAAGATGACCGCAATGGGAGAAAGACATCTTTGTTTGTGCAATTAATA
CTAAAAGAAAGTAGCAACACTAACAGATAAAAATGATTAATGTTTCGATTAAGACGAGTT
ACTCAATTTAAGCCAGACCATAGATGGATAATCCAGTTACCAAACACCCCTATAAATCTC
ATCTAATTTGTGTTGTTTAAGGCATACAATCCACCTTAACTATCCTCTAACACTACTTGT
ATAGTTCGATGGCAAATGCTCGTATTGCTAGGTTTGTTACAGAGGTAGCACCACCACAGT
TTATAAATGTCATGAGACACCGCGCTTCTAAGATGCTAGATACCATCAATGAGGAGGAAA
GAGAAGCTACCAAAAGCGAGTTACTTTTTCTTAAGAGTTCTTCACCTTCATCATCATCTT
CATCTTCATCTTCAAATGCGAACAATTCTAAATATTTTCTCAAACAAGTTGAGAGGTCTT
TTCCTGTATATGGCAGCTAAAGTCTCTACTTGAGCTTGCTGAGAGGAATACACATTTTAT
CTCTTTCTGTTGCTACTTTTTGTAAATATATAGATATGAATTTGTTTGTTTTTCTATCTG
CCTCTTTTGTCCATAAATATTTTATTGTACAAAACAAGCATTAAGCAAGAGTAACAAGTA
GAGTTTTAGCTTATAAGCTTGGATGGTCACTCAATTTTGGGTAACTGGCCTTCGTAGTCA
ATCAGCGTTATTGTCTTTTAAAAGTCACTCAATTTTGGGTACTTGGTGTCCATAGTCACT
CGAATTTATTTGTCTTTCAAATATCATTCAACTTTGTCTCATTATTTGTTATGACTCAAA
ACTTTTCTTGAACAATTGCC
