Microarray Probes on PGSC0003DMT400023104
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5507_PI426222305 |
JHI_St_60k_v1 |
GACTTGATGGGACTTCTGCTCTACAACATTTTCGACTTTAAACTATCTTTTCATTTGTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400023104
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400023104 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G06620.1 |
+2 |
6e-151 |
440 |
212/355 (60%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365 |
Transcript Sequence (1540 bp)
>PGSC0003DMT400023104 1540 pgsc_dm_v3.4
AAAAAAGTCTCAAATCTTGCCCTCGAAGAAGTGGTCTAGTAGTCAATGAAGTAGTGGATT
GAGAAATGAGAACCATGAAGTTCAAGGTTTAAATTTAAGTGATTTCTTCGTGTGTGTCTA
AGTATTGATAAATAGAGATACTCGATGTCTGTTCTGGTCGGAGATAACATCTACTAGACA
TGTGGACGCAAACTGACCAAGACATCACTTTTGTAAAAAGAAAGAGTCTCAAAATCTTGA
TATAAATTACTATATCCTATTGATGAATAAGAGAACAAGAGATATCAAGAAAATGGATAC
AAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGG
TGTCAAAGGACTTGTTGATGCAGGAGTAAATAAAGTCCCTCAGATATTCATTTCACCTCC
AGATACACACTCAAATTCCACCACAGGACAGTTCATATTTCCAGTCATAGACCTCCAAGA
CATTGATAGTCATGATCAAATCAATCGAAAAGAACTCATTGAGAAAGTCCGCGATGCATC
AGAGACATGGGGTTTCTTCCAAGTGATCAATCATGGCGTTCCATGTGATGTTATGGCAGA
AATGATTCGAGGTGTTTGTAGTTTTCATGAACAAGATAATGATATCAAGAAACAATGGTA
TACGCGAGAGTTTACTAAAAGAGTTGTTTACAATAGTAATTTTGATTTGTATAGTGCACC
AGCAACTAATTGGAGGGATACTTTTTCCTGCATTATGGCTCCTAATCCTCCTAGTCCTGA
AGAATGGCCTCCAATCTGTAGGGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACT
CGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGTCTCAATAGAAACTATCTCAA
TGACATGGATTGTGATAAAGGACTGTCAGTTGCATGTCACTATTATCCAGCTTGTCCAGA
ACCAGAACTTACCTTAGGTGCTAGTAAACATGCTGATGACGGATTCTTGACTTTGCTTCT
TCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCC
TACCCCTGGTGCTCTTGTTGTAAATATCGCAGATCTTCTGCAGTTAATATCAAATGACAA
GTTTAAAAGCGTTGAACATCGCGTACTGGCAAATCGTGTTGGTCCTAGGATATCGATAGC
ATGCTTCTTCTCCACATTTTTCCTAGCATCGTCAAGACTTTATGGTCCTATTAAGGAGTT
GTTATCAGAAGAAAATCCATCAAAATACAGAGAAACAACAATTCAGGAATATGCTGCCTA
TTTTACTGCAAAGGGACTTGATGGGACTTCTGCTCTACAACATTTTCGACTTTAAACTAT
CTTTTCATTTGTCTCTTCATGCTGCTTATTCAAAGTAAATAGATGTTATATTGTAACACA
TATTAGTATAGATAATCACTATTTATGCATTGTAATCTTCAAGTTATAAAGAATCTCATA
AGTTACTTTCTTGGTTATTTTGAAATTCCTAGCTTGTTTC
