Microarray Probes on PGSC0003DMT400023049
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5542_PI426222305 |
JHI_St_60k_v1 |
TGTGGCTGTATCTGCTTATGTTGTTAAAGCTTTTGCTTTATGGGAAGTTGATGATCAACA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400023049
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400023049 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G37530.1 |
+1 |
6e-37 |
125 |
62/122 (51%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15751060-15751428 FORWARD LENGTH=122 |
Transcript Sequence (390 bp)
>PGSC0003DMT400023049 390 pgsc_dm_v3.4
ATGAACTTCACTTTCTTGAACTCAATTCTTGAAAGAGTGTCATTAAGGCTACCATTACTA
TACTATGCAGCAACATGGACAACTATTTTGACGATAATCGTAGCTGTGGCATCATTTTCT
CCAGAATTTGCCTTTGTTTCTGCGATAACACCTTCTTCTTCCTTCTCTCAAGCTTGTCAT
CATCATCATAATCGTAACGAAAATGGATATGTAAGAATACCATTGGATCTTCCATTAGAG
GTTTTTTGTTTCCCTTCTCAAGTTTTTAAAAGATCTCAAATGGATTTAATTGTTCCTCCT
ATTTTTGCTGCTACTATTGTGGCTGTATCTGCTTATGTTGTTAAAGCTTTTGCTTTATGG
GAAGTTGATGATCAACATAATCAATTTTGA
