Microarray Probes on PGSC0003DMT400022995
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5549_PI426222305 |
JHI_St_60k_v1 |
GTTATGAGTCCCGCAATTCAGTAAGTGGGAGATGTCTTTTTCTAGAATTTAGTAAACTAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400022995
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400022995 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G02220.1 |
+2 |
3e-08 |
49 |
23/59 (39%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:441884-442102 REVERSE LENGTH=72 |
Transcript Sequence (524 bp)
>PGSC0003DMT400022995 524 pgsc_dm_v3.4
AATTCATTCCCCCTCTCCACACGTTCAAACTTGCCCCATTTTCAGTCAACACGTTCTCTG
TTTTTCCTTTCCTCCATTAAATAAACACCAAATTCTCTATCAAATTACTTGTTTTTCTCC
AATTTGTAGAATAATGAACATGGATATGGAGGAAGAAATATGTACAACACCAAAAAATCA
AGAATATCGAATCCAAGCGCCATTAGAGTGTCCGCCAGCTCCGAAGAAGAAGAAGAATGA
AAACAGAGCATCAGCAAAAAGGTACAAAAAGCCCAAGAATACAGCCTACTTTCACTCTCC
TGATATTGACGCCTTTTTTGCTGGGGGCGGAGCTAGAGTTTTAGTTATGAGTCCCGCAAT
TCAGTAAGTGGGAGATGTCTTTTTCTAGAATTTAGTAAACTATTTTTTCTAAGATTCGGG
ATCCAATAAGTTGTCTTTATTTTAGAAAAATTCATAAACTTAAAATTTTGAATTTGTCCT
AGTTATTTAATTAGCTAGGTTGTAAAATAGCATAGATATAGCCT
