Microarray Probes on PGSC0003DMT400022965
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_5472_PI426222305 |
JHI_St_60k_v1 |
GGTGAAAGTAAAGTGTAAAGGATAACCCAAAAGGGACCTTACAATTTATGTGTTCTTATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400022965
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400022965 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G02090.1 |
+3 |
1e-08 |
50 |
31/61 (51%) |
unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:412350-412607 REVERSE LENGTH=85 |
Transcript Sequence (580 bp)
>PGSC0003DMT400022965 580 pgsc_dm_v3.4
AACTAAACTACCGAAATTCAAAAAAAAATCCAATATATTTTTTTTTTACAAAAATGGAAG
GATTAATTCCATTTGTTTACAAAGCAATAATGGATTACAAAAATGGAGGCCAAATTGCTA
CTGGTTCACCAAGATGGATGAATAATGATTCGCCGTTATTGGGTTCTTACATGAGACTTC
CAGGCGGGTCGGGTCGGTTTGAGAATTCCGATATACAGTTATTCGGGTCACCGGATAATG
AGTTTTCGATGAATTCGTCGTCAGCTTCTTCTTCATCAGTCGCCGCCGGTAAGAGATCAA
TGGTTTCCGGTGGATCACCGACGGCGAGGTGTCACTGGATTTCTACTCGTGCTGTAAACA
GATAAATTACATATTATTTTGAAAAAAGGTCAAAAATATAAAGTGGGTATTTTTAATTTA
AAGAAAAATGGAAAATGTGTGAAAAAAGGTGTGTTAGTTTTTTTTTTTTTTTTTTAGTTT
GGTGAAAGTAAAGTGTAAAGGATAACCCAAAAGGGACCTTACAATTTATGTGTTCTTATG
TGAAAAATCAAAGTGTATATTACTACTTTGTTAAGAAGCA
