Microarray Probes on PGSC0003DMT400021883
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_49011_PI426222305 |
JHI_St_60k_v1 |
CGCCCTGTAAATAATCATCACTAGTATCCTGTCTATGTATTTCAACTTGTTCTCTTTGAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400021883
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400021883 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G06870.1 |
+2 |
8e-110 |
329 |
165/309 (53%) |
polygalacturonase inhibiting protein 2 | chr5:2133941-2135016 FORWARD LENGTH=330 |
Transcript Sequence (1188 bp)
>PGSC0003DMT400021883 1188 pgsc_dm_v3.4
CTTTTTCTTGTTACTTGCTTCATAAAATATAATGAAGCCCTCCTCCTCCTCTATACTTTC
CATTCTTTCTTTTTCTCTCTTGTTTCTTTTTCAACTCTCTTCATCTGAAAGATGCCATCC
AAATGACAAAAAAGCCCTCCTAGAATTCAAAAAAGGTCTAGGCAATCCTGAAGACTTGGG
TAATTGGGATCCGAAAACTGATTGTTGTACTGATTGGTACGGACCTACTATCAGATGCGA
TGAAAAAACCAATCGTATTAACGTCATCGACTTCACCAAAATGGATATGGCCGGATACCT
CTCCCCCGCCATAGGAGACCTTACATACCTTACAACATTCAGTATCCACAATGTACGTAA
TCTCACCGGTCCAATTCCATCAACAATTGTTAAACTGACTAATCTCGAATTCTTCAGAAT
TAGTCAAACAAACATTTCAGGACCTGTCCCTGAAGTTCTTAGTAAGTTGAAAAGCTTAAC
GTACATTAACTTGTCCTATAATAAGCTTGTTGGAACTATTCCACCTTCGCTATCTCAACT
TCCACACTTGGAGTTTTTAGGATTGGATAGGAACAAACTTAGTGGACCAATCCCGGAGTC
TTTTAGAAAGTTAGCACCAAATCTAACGTATCTTTACCTTGGACATAACCAACTTACAGG
GATTGTACCAACTTCATTTGCTGGCTGGAGTTTTGCGACAATTGACTTGTCAAGGAACAT
GCTTGAAGGGGATATTTCATTTTTGTTTGGTAAAGATAAGACTACATTTGAAATGCTTTT
GGATAGGAATAAGTTTGAATTCGACTTCTCAAAGTTGACGTTTGGGAAGAGATTATGGAG
GTTGGATTTAAATCATAACAAGATTTATGGGAGTATTCCAAAAATAATAGCCAAGAATCC
GTGGCAAATCTTGAATGTGAGTTATAATAGACTTTGTGGCGAGATTCCAAAGGGTGAGTA
TATGAAGAAATTTGAGATATATGAGTATCTTCACAACAAATGCTTGTGTGGTGCTCCATT
GCCGCCCTGTAAATAATCATCACTAGTATCCTGTCTATGTATTTCAACTTGTTCTCTTTG
AATGTTGATGAATAATTAAGCGACGAAACTCAAGGCTTAAAAATGTACTTTAATTAATTT
ATGAATGAATGTTATCCTTTTTTAGTAACTTCTCGATGGATGATTATA
