Microarray Probes on PGSC0003DMT400019708
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_49900_PI426222305 |
JHI_St_60k_v1 |
GTTCCTCCTTCAAAGGCTACTAAACCAGATGGTACTGAATGGAAATGGAATTGTTTTAGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400019708
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400019708 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G22370.1 |
+2 |
6e-157 |
473 |
245/364 (67%) |
alternative oxidase 1A | chr3:7906890-7908416 FORWARD LENGTH=354 |
Transcript Sequence (3181 bp)
>PGSC0003DMT400019708 3181 pgsc_dm_v3.4
TATATTGTTAACTAAATTATTACTATCACATAAAAAATATATATATTATTTGCCTTCTTC
CTCAAGTTTCTTTCCAAACTTCCGGCGAACATTTTTTTTGATTCCAGATTTTGATCGGAA
GTTATCAAACATGATGACCCGTGGAGCAACAAGGATGACCCGAGTTGTCATGGGTCATAT
GGGTCCACGTTACTTTTCAACTACAGTTCTGCGAAATGATCCCGGGACCGGAGTTGTTGG
TGGAGCCGCTGCCGGACTTTTGCATGGTTTTCCGTCGAATCCATCGGAGAAAGTGGCAGT
AACGTGGGTTAGGCATTTTTCGGCGATGGGTTCACGGAGCGCTAGTACTGCGGCTTTGAA
TGAAAAGCAGCAAGAGAAGGAAAGTAGTGACAAAAAAGTGGAAAACACGGCCACCGCCGC
TGCAAACGGTGGTGCTGGTAAATCTGTTGTGAGTTATTGGGGTGTTCCTCCTTCAAAGGC
TACTAAACCAGATGGTACTGAATGGAAATGGAATTGTTTTAGGCCATGGGAGACTTATGA
AGCTGATATGTCGATAGATCTGACGAAACACCATGCGCCTGTAACGTTTTTAGACAAATT
TGCTTATTGGACTGTTAAGGTCCTTCGATTCCCCACTGATGTATTTTTTCAGAGGAGATA
TGGTTGCAGAGCAATGATGTTAGAAACAGTGGCGGCGGTGCCTGGAATGGTGGGAGGTAT
GTTGTTGCACTGCAAGTCATTGAGGCGATTCGAACAGAGTGGTGGATGGATCAAAGCTCT
GCTTGAAGAAGCCGAAAACGAGAGGATGCATTTGATGACTTTCATGGAAGTTGCAAAGCC
AAATGTGTACGAACGTGCCCTGGTTTTCGCAGTGCAAGGTGTCTTCTTCAACGCTTACTT
TGCTGCTTACCTTATTTCCCCAAAATTGGCTCATCGTATCGTGGGATATTTGGAAGAAGA
AGCTGTTCATTCGTACACTGAGTTCCTCAAGGAATTGGACAATGGTAACATTGAGAACGT
ACCTGCTCCTGCTATTGCTATTGATTACTGGCGTTTGCCTAAGGATGCCACTCTCCGCGA
TGTTGTCTTGGTTGTTAGGGCTGATGAGGCTCATCATCGCGATGTCAACCACTATGCATC
TGACATTCATTACCAAGGACAACAGCTGAAGGACTCACCAGCACCACTTGGGTATCACTA
AGCGACTAATAATAAATACAAAGAGATCAGACATATCAAGCTAAAAGTTCGTCACTATTT
TGTTCCTTTTTTGAACTGGTGATATAGCTATGTAGTAGGTAATACTAATCTTGAATGTTG
ATGTACATATTTTTGTGTGGATTTGGTTCGTTCTTTGCTGCCTCTTCATCAATAAGTGGT
AGGGTACGATGAGCTCTGTATCATTGTGGAGCATATATATTCTTGATGAAATTATATCAT
CGTTTTGTTTACTTTTGTCACACTTTTGATATGAATTAATCAAGATCAAAATTAGGACAT
AATAACAAGTAAAGATAATCGCGGTTGTGGGAGATTGAGGTCAATAAGTTTGAGTTTCCC
CTTCTGAAATTCGTGAAACTCCATTGGCGTTGTTTGTAGAACTTTAACAGTGGCTGGCAG
AAGAAGCTCCAACTTTGGAATCTTCTTTATGGGTACGAATGAATGTGATTGAGTAAAGTA
AGCAATACAGGCTCAATTTTGAAGGTTGTGAATAGGAGGCTGCTTCGTCTTCCTTTCTGA
AGCTTGATGAAAGAAGTCGAGAAAAAATGAAGGGAGCATCACAAGTTTTCCTAATCAGAA
CCTGGAAAGTATTCTTGCATCAGTTTTCGATGAATTGTTTGTTAAGAGACATAATAGAAG
AGCAAAGAGACGAGCTATGAATACTTGTGGGAATACACGGGATATGTTGGCAATTACTAC
TTTCAGGAGGTTTATAGATCCAGTTATCGGATTGGGAGAAGAGATCAATGGTAGGAATCA
GCAACAACAACTTGTTGTTTGTGAAGGTGCATGAGTGGTTTATGGGAATTTAACACCACA
AGATTTGCAGTTGAAAGAAGAAATGGAAGCAGACATACTACAACAATGCTTGAATTGTTA
AGAGTTATTCATGATCTTCCTCCTCTCTATTGAGGAAATTACACGTTGAAACGACAGATT
TTTGTTTCTCCATTGATTGGGATGAGGAAATCGTGACTTACTACAAAATGCTTGAATTAT
TTGAGATCATTGATGATGTTGAACTAATAAATCCTCCTTTCTCAAGGGGAATAATAATAA
TTGCGGTATCTCATCAAGAATCAACAGTTTTTTTGTTCTCGATTGATTGAGTGGGATGAG
GATTTCAACAACATAAAACAGCCATTGCTACCAAAACTCTCATCTGATTACCGTCCCATT
CTATTACAGTGTGGGGATCAACTAGAACATACCAAGTCATATTTTAAGTTTGAGAATTGG
TGGCTTGAGGCAGCCTTCACCTCTAACCTACACCATTGAGGGATACACAAAAAAAGATTT
GATTATGGATACAACGGTAATATCTAATGAATATGCGACTGAAAGGATATGTATCAGGGA
TTCGTTGCAAACTAGACATAGAAAAAACTTATGATCACGTGAATTGAGTTTTTCTTATCA
GGGATATGAACTTTGGTAGTAAATGGATAAACTCAAATTACAATATGTATTTGGTGGATT
ATATGGAAAGAGAGAACCACAAAATGCTTTGAAGATCATTTTATGAGAAGAGCCAATATT
AGGTATGATTTGTTTTTTTTAGCAAAAATTAGATTAAATATTATGAACAGTACTATTCAA
TATTCATTGACCAATTTTTCCATGAAGCAAGGGAAATGCAAGTTCACAGCTACTTAGCTT
TCTGGTCAAGAGATTAAACACACACACCATCATCAACAACAACAAAACAAATAAAAACAG
AAAAAATTCAATGATGGGACGACCCGAATTCAAAGAAATCACCAACATGAACACAATAGT
GACCCACATGAATGGAGTAACGACTGCCCCGCTGTCTGATTACACTTCCCCTTCATTCCT
TCATCTCCAAAGACTAAGAAAACAATGTACATACCTCATTGATCAACAACTATGGGAAGA
CCTTAGAGCAATATTTGTGTTTCTCACTAAGAAAACAATGTACAACTCTTTTGGCAGACC
C
