Microarray Probes on PGSC0003DMT400019230
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_40958_PI426222305 |
JHI_St_60k_v1 |
GATTGTCACTCACCAGATGATTTTGTTCTAGATACATTGCAACTATCGACGGTGAAGTTC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400019230
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400019230 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G39140.1 |
+2 |
2e-50 |
175 |
79/107 (74%) |
pseudouridine synthase family protein | chr2:16330238-16333153 FORWARD LENGTH=410 |
Transcript Sequence (979 bp)
>PGSC0003DMT400019230 979 pgsc_dm_v3.4
CTGCAATTAATTGTTCTTCTTTTCTTCAAAATATGTGTATAGTTAAAGTTTAAGCATTCA
ACCAGTCTTTCTGCTATGATTGTCACTCACCAGATGATTTTGTTCTAGATACATTGCAAC
TATCGACGGTGAAGTTCATAAGCGACACTTGATAGCCATTAGTGAGGGAACAGTTATTGA
CGGTGTCCATTGCATCCCAGATAATGTTGAACTACTACCAGGGCAGCCTGACTTATCAAG
ACCTCGTCTGCGTATTGTGGTTCATGAAGGACGGAATCATGAAGTTCGTGAACTTGTGAA
AAATGCTGGACTTCAGTTGCGTGCACTGAAGCGTATACGTATAGGTGGTTTCAGGCTCCC
CGCAGATCTTGCGCTTGGCAAGCATGTTGAATTAAATCAAGCTAATCTGAAGGCATTGGG
TTGGAAGAGTTAAAGTTGGATGAGATCAGAACCAAGATCAGCATGCATGCATCGAACGGG
CATAAGAATCGGGGATTATGAAGAAAAATTAGACAGTGACTGGTTAGTAGCATTCACTTC
TGCATGTTCAATTTCAAATCTTGCAGATCTGATAAGGTATATAAGGTTTTAGTCATTGCA
AGACGAATGCACCATATGTCGACTGTCAACAGTAAATATTCCCGAAATTGGGTGTTTTAG
TTACCTCCATTGATTACATCTCTCTGCCTATATGCCAATTAACAAGCAACAGGCCTGTAA
GATTGTACATAGCACAGTTATGTTATTGATGAATGAAATGTCCAATTATTTTCTACGACT
CTTAATCCTGTCGGAGATTTATTTACCAATAGAAAATATAAGAATTGTTGAGCCAAATGG
AACATATGAACACAGGGAACTCATCTTCTTTGTTTCCTTTTTTGTTTTTTGTTTTGGTGT
GTGTGTGTGGCCAAACTGAATTTGTTTGGATATGAGGCTATGTTGTTTTTATTGAAAGAG
TTACATGATTGACGGAAAT
