Microarray Probes on PGSC0003DMT400019013
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_41003_PI426222305 |
JHI_St_60k_v1 |
GTGAGAATTTTGAGTTTTAATTATTTTTGAGTGACTCTAGTGTCTAGCTAGGTAGCACCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400019013
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400019013 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G20898.1 |
+2 |
1e-11 |
62 |
27/56 (48%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7323796-7324203 FORWARD LENGTH=108 |
Transcript Sequence (1190 bp)
>PGSC0003DMT400019013 1190 pgsc_dm_v3.4
CTTTTATCTCCTTCAACACAAGTATAGTGCAAGTTTTCCTTTTTACTTGTTCTTTCCTTT
TCTTGAGTACTTAGTGTTCCTAAAAAAGATAATTTCCTTCCAAAGAGGTATCCCACTAGT
CTTTTCTTTACTTTTTCAGTCAAAAATTTTAAGTGTCTCTTTATAAAGTATAGTTTTCCC
AATCTTTATATATATATATATTAGTGGTGGTAGTTGTGCTCTAACTAAAGCACTATTATA
GTTATATACAACTTCCCTTTGTGTCCAAACTCTAGTACAAATCCACCCTTCATCTACGTT
TATGATCTCGTATATTTAATTATCAAATTCTCCCCTTCATGATCTATTCGTATATTTTGC
TTCTCTGACATCTTACTGAGTTTCGTTCTACCTCTAATCGAATATCATTTTCATACAAAT
ATACCCTCCAATGGGTCCTTCTAGTACTAGTAGAACAAGAAGTACAAGAAATTCAACAAC
AACAACAAGAACAAGAACAACAACAACAAGAAGTCTACAAAAGAAGCAACAAGAGAAGAA
AAGGAAGAAAAATAAAGAAGAGATGATTAAATCATCATCTATTATTAATTCTTCTTGCAA
ATCTCCAAGTAAAGAATCAACAAATTCATTGAAGAGATCATCATCATCATTATCATTATC
ATATGATGATGAAATTGAGAATAATAATAATATTTGTTCAACTCCAAGAGCTGAAAGATT
TCGAATTCCAGAAATAAAAACATGTCCACCAGCACCAAAAAAGAGAAGAATAAATATTGA
TTCAACATCATCATCATCATGTCATTCATTGAGAAGAAATCCAGTTACTTTTTTTGCTCC
ACCAGATTTAGACATATTTTTCTTCTTAGCACTTGGTGATATTCCAGTTTGAATTAAAGT
TTGTGTAGTAATCATCATAATACTTGTAATATGGAAGAAAAAAAAAAGATATCAACTTTA
TGTTGATTACTTTTTAGTTTTAGTTTTTTTTTTCTTTTTGGTTTTCATATGGTCTAAGAA
GTATGTAACTTTGGTTAGATCAAATATGGTGAGAATTTTGAGTTTTAATTATTTTTGAGT
GACTCTAGTGTCTAGCTAGGTAGCACCTAGGTTTTTTTATTTTTTAAATCCTTTGTGCTA
ATTATCAGTTTGGTATTGTTTTGTTTGTTTTTTAATTTGTAATGCAAGGC
